miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 20793 0.71 0.098057
Target:  5'- cGCCGcCCUGUCGGCGCcgacgGCGCgugUCGCg -3'
miRNA:   3'- aCGGU-GGACGGUCGCGa----CGCG---GGCGa -5'
26272 5' -64.6 NC_005345.2 + 45913 0.71 0.100507
Target:  5'- cGCCGCgUGCaCAguGCGCUGCccgaacuGUCCGCUg -3'
miRNA:   3'- aCGGUGgACG-GU--CGCGACG-------CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 32280 0.71 0.100783
Target:  5'- cGCCACgCUcggccguaccgcGCCuGCaGCUGCGCCCGgUa -3'
miRNA:   3'- aCGGUG-GA------------CGGuCG-CGACGCGGGCgA- -5'
26272 5' -64.6 NC_005345.2 + 39725 0.71 0.100783
Target:  5'- gGCCacgacACCUuugacaGCCGGUcccGCUGCGCCUGCg -3'
miRNA:   3'- aCGG-----UGGA------CGGUCG---CGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 17968 0.71 0.100783
Target:  5'- gGCCGCCUGCCGG-GCcGCGgccucgaucuCCCGUg -3'
miRNA:   3'- aCGGUGGACGGUCgCGaCGC----------GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 36234 0.71 0.100783
Target:  5'- aGCCugCUGCCGGUuguuCUGCGCCgGa- -3'
miRNA:   3'- aCGGugGACGGUCGc---GACGCGGgCga -5'
26272 5' -64.6 NC_005345.2 + 47974 0.71 0.103581
Target:  5'- aGCCGCCcGUguGCGCcGCGCaCGCUc -3'
miRNA:   3'- aCGGUGGaCGguCGCGaCGCGgGCGA- -5'
26272 5' -64.6 NC_005345.2 + 22596 0.71 0.103581
Target:  5'- aGCC-CCggGCguugCAuGCGCUGCGCCUGCg -3'
miRNA:   3'- aCGGuGGa-CG----GU-CGCGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 39473 0.71 0.103581
Target:  5'- gGCCugCaGCCGGCG--GCGCUCGCg -3'
miRNA:   3'- aCGGugGaCGGUCGCgaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13860 0.71 0.103581
Target:  5'- gGCCGuCCacaGCCA-CGUUGCGCCUGCUc -3'
miRNA:   3'- aCGGU-GGa--CGGUcGCGACGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 16169 0.7 0.106161
Target:  5'- gGCCGCCUGCgccgaggacuacgCGGaCGCggccgGCGUCCGCc -3'
miRNA:   3'- aCGGUGGACG-------------GUC-GCGa----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 47105 0.7 0.109397
Target:  5'- gGcCCGCCggGCC-GCGCcGgGCCCGCUc -3'
miRNA:   3'- aC-GGUGGa-CGGuCGCGaCgCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 11227 0.7 0.109397
Target:  5'- gGCaugaCUGCCcGCGCUGCccgcaGCCCGCg -3'
miRNA:   3'- aCGgug-GACGGuCGCGACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 7691 0.7 0.112418
Target:  5'- cGCaGCCcGCCgguaccgaagguGGUGCUGCuGCCCGCUa -3'
miRNA:   3'- aCGgUGGaCGG------------UCGCGACG-CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 3745 0.7 0.115518
Target:  5'- cGCCGCCUGUCGGa-CUG-GCuCCGCUg -3'
miRNA:   3'- aCGGUGGACGGUCgcGACgCG-GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 18487 0.7 0.118697
Target:  5'- aUGCuCGCCgcguucgGCaaaGGCGCUGCGCUCGg- -3'
miRNA:   3'- -ACG-GUGGa------CGg--UCGCGACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 41298 0.7 0.118697
Target:  5'- gGCCGCCucggUGCCGGCGCcgGCGgCUGg- -3'
miRNA:   3'- aCGGUGG----ACGGUCGCGa-CGCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 18429 0.7 0.118697
Target:  5'- gGCCGugauUCUGUgGGCGaacCUGCGCCCGUg -3'
miRNA:   3'- aCGGU----GGACGgUCGC---GACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 36691 0.7 0.121957
Target:  5'- cGCCucGCCUGCCccgcgagcuGCGCgagGUaGCCCGCg -3'
miRNA:   3'- aCGG--UGGACGGu--------CGCGa--CG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 40826 0.7 0.121957
Target:  5'- cGCCGCCggaacGCU-GCuGCUGCGCgCCGCc -3'
miRNA:   3'- aCGGUGGa----CGGuCG-CGACGCG-GGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.