miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 36602 1.06 0.000137
Target:  5'- aUGCCACCUGCCAGCGCUGCGCCCGCUc -3'
miRNA:   3'- -ACGGUGGACGGUCGCGACGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 21934 0.82 0.011733
Target:  5'- -cCCACCUGCgAGCGCUGCGCcgaCCGCUg -3'
miRNA:   3'- acGGUGGACGgUCGCGACGCG---GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 9083 0.76 0.037881
Target:  5'- gGCCGCCgucGCCGGCGac-CGCCCGCa -3'
miRNA:   3'- aCGGUGGa--CGGUCGCgacGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 21498 0.76 0.038971
Target:  5'- cGCCcggagaACCUGCaAGCGCUGUGCCgGCa -3'
miRNA:   3'- aCGG------UGGACGgUCGCGACGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 11576 0.74 0.051693
Target:  5'- cGCCugCaGCCcGC-CUGCGCCCGCc -3'
miRNA:   3'- aCGGugGaCGGuCGcGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 8125 0.74 0.054684
Target:  5'- gGCCGCCgucgucgacgGCUcuuGGcCGCUGCGCCCGUg -3'
miRNA:   3'- aCGGUGGa---------CGG---UC-GCGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 11420 0.73 0.061179
Target:  5'- cGCCgACCaGCCGGCGCcGCGCCgcaGCg -3'
miRNA:   3'- aCGG-UGGaCGGUCGCGaCGCGGg--CGa -5'
26272 5' -64.6 NC_005345.2 + 5228 0.73 0.061179
Target:  5'- gGCCgGCCUgaucGCCGacGCGCUGCGCgCCGCc -3'
miRNA:   3'- aCGG-UGGA----CGGU--CGCGACGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 44960 0.73 0.062916
Target:  5'- cGCCGCCUGCaCGGC-CUGCcGcCCCGUg -3'
miRNA:   3'- aCGGUGGACG-GUCGcGACG-C-GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 37557 0.73 0.068417
Target:  5'- gGCCGCCccacGCCAcCGCgagGCGCCCGUc -3'
miRNA:   3'- aCGGUGGa---CGGUcGCGa--CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 37706 0.72 0.076476
Target:  5'- cGCCAguCCUGCgggaucgcgcugCGGCGCgGCGCCgGCUg -3'
miRNA:   3'- aCGGU--GGACG------------GUCGCGaCGCGGgCGA- -5'
26272 5' -64.6 NC_005345.2 + 36467 0.72 0.078411
Target:  5'- cGCCACUcucgccgugucggUGCCgugggGGCGCaguucagccagUGCGCCCGCUc -3'
miRNA:   3'- aCGGUGG-------------ACGG-----UCGCG-----------ACGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 31590 0.72 0.08311
Target:  5'- cUGCCGggcCCUGCuCGGCGCg--GCCCGCg -3'
miRNA:   3'- -ACGGU---GGACG-GUCGCGacgCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 1360 0.71 0.087834
Target:  5'- cUGCCACgaGCCGGUGCagucGCGUCgGCg -3'
miRNA:   3'- -ACGGUGgaCGGUCGCGa---CGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 26041 0.71 0.09029
Target:  5'- cGCCGCCUcgcucGCCucGGCGa-GCGCCUGCUc -3'
miRNA:   3'- aCGGUGGA-----CGG--UCGCgaCGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 18257 0.71 0.092812
Target:  5'- cUGCuCGCCgGCC-GCGCcGuCGCCCGCa -3'
miRNA:   3'- -ACG-GUGGaCGGuCGCGaC-GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 41805 0.71 0.0954
Target:  5'- cGCCACCgcggGCCAcaccGCGUgcgacucgGCGUCCGCc -3'
miRNA:   3'- aCGGUGGa---CGGU----CGCGa-------CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 23998 0.71 0.0954
Target:  5'- aGUCGCCguucGUCGGCGCgaucGCGCUCGCc -3'
miRNA:   3'- aCGGUGGa---CGGUCGCGa---CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 34236 0.71 0.0954
Target:  5'- aGCCGCCgcGCCgcGGCccGCUuCGCCCGCUg -3'
miRNA:   3'- aCGGUGGa-CGG--UCG--CGAcGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 41080 0.71 0.098057
Target:  5'- gGCCGCCUGCuCGGCGgcgagcuugauCUGCaGCUCGUg -3'
miRNA:   3'- aCGGUGGACG-GUCGC-----------GACG-CGGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.