miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 542 0.66 0.235051
Target:  5'- aUGCCcuCCgaacaGCCGGCGUggguccuCGCCCGCc -3'
miRNA:   3'- -ACGGu-GGa----CGGUCGCGac-----GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 1360 0.71 0.087834
Target:  5'- cUGCCACgaGCCGGUGCagucGCGUCgGCg -3'
miRNA:   3'- -ACGGUGgaCGGUCGCGa---CGCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 1468 0.67 0.201702
Target:  5'- aUGCCGUCgGCCGugauGCGgaGCgGCCCGCg -3'
miRNA:   3'- -ACGGUGGaCGGU----CGCgaCG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 1990 0.66 0.235051
Target:  5'- gUGCCGCa-GgCGGCGCUcacaGCGCCCccucGCUc -3'
miRNA:   3'- -ACGGUGgaCgGUCGCGA----CGCGGG----CGA- -5'
26272 5' -64.6 NC_005345.2 + 2781 0.68 0.155249
Target:  5'- gGCCucgguacgGCUUGUCGGCGCcgGCGUgCGCUc -3'
miRNA:   3'- aCGG--------UGGACGGUCGCGa-CGCGgGCGA- -5'
26272 5' -64.6 NC_005345.2 + 3745 0.7 0.115518
Target:  5'- cGCCGCCUGUCGGa-CUG-GCuCCGCUg -3'
miRNA:   3'- aCGGUGGACGGUCgcGACgCG-GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 4245 0.69 0.143709
Target:  5'- cGCCGCUgcggagcgggacgagGCCAcGuUGCUGCGCCuCGCg -3'
miRNA:   3'- aCGGUGGa--------------CGGU-C-GCGACGCGG-GCGa -5'
26272 5' -64.6 NC_005345.2 + 4533 0.69 0.143325
Target:  5'- cGUCAgUaGCCGGCGCUGC-CgCCGCUc -3'
miRNA:   3'- aCGGUgGaCGGUCGCGACGcG-GGCGA- -5'
26272 5' -64.6 NC_005345.2 + 5207 0.66 0.211793
Target:  5'- gGCacgGCCgGcCCGGCGCUacacgccgucgggGUGCCCGCg -3'
miRNA:   3'- aCGg--UGGaC-GGUCGCGA-------------CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 5228 0.73 0.061179
Target:  5'- gGCCgGCCUgaucGCCGacGCGCUGCGCgCCGCc -3'
miRNA:   3'- aCGG-UGGA----CGGU--CGCGACGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 5668 0.68 0.159419
Target:  5'- gGCCcggACCgaGCCGaccGCGCUGCG-CCGCg -3'
miRNA:   3'- aCGG---UGGa-CGGU---CGCGACGCgGGCGa -5'
26272 5' -64.6 NC_005345.2 + 5845 0.67 0.186621
Target:  5'- aGCCugCUGUgCAGUuccuuaaguuGCcGCGCCUGCUc -3'
miRNA:   3'- aCGGugGACG-GUCG----------CGaCGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 7691 0.7 0.112418
Target:  5'- cGCaGCCcGCCgguaccgaagguGGUGCUGCuGCCCGCUa -3'
miRNA:   3'- aCGgUGGaCGG------------UCGCGACG-CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 7777 0.67 0.186621
Target:  5'- gGCguCCaugaguccguUGCCgAGCGCUGCGCcgCCGCc -3'
miRNA:   3'- aCGguGG----------ACGG-UCGCGACGCG--GGCGa -5'
26272 5' -64.6 NC_005345.2 + 8020 0.67 0.184687
Target:  5'- aGCCGCCagucggaGCCccguaccgcgggcGUGCUGCgGCCCGCg -3'
miRNA:   3'- aCGGUGGa------CGGu------------CGCGACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 8125 0.74 0.054684
Target:  5'- gGCCGCCgucgucgacgGCUcuuGGcCGCUGCGCCCGUg -3'
miRNA:   3'- aCGGUGGa---------CGG---UC-GCGACGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 8965 0.67 0.191534
Target:  5'- cUGCaCGCCgGCCucgaucGCaGCUGCGCgCCGUa -3'
miRNA:   3'- -ACG-GUGGaCGGu-----CG-CGACGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 9050 0.66 0.24104
Target:  5'- gUGaCACCgagcagGCgCGGCGCcauUGCuGCCCGCg -3'
miRNA:   3'- -ACgGUGGa-----CG-GUCGCG---ACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 9083 0.76 0.037881
Target:  5'- gGCCGCCgucGCCGGCGac-CGCCCGCa -3'
miRNA:   3'- aCGGUGGa--CGGUCGCgacGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 9709 0.68 0.163691
Target:  5'- gGCCGCCgcgugaGCC-GCGCcGCGCgggCCGCg -3'
miRNA:   3'- aCGGUGGa-----CGGuCGCGaCGCG---GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.