miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 48386 0.67 0.201703
Target:  5'- cGCCGCCgGCCGGgGCUaucccacgaGCaCCGCg -3'
miRNA:   3'- aCGGUGGaCGGUCgCGAcg-------CG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 48275 0.69 0.143325
Target:  5'- aUGCCGCCcGaCCGcGCGCaGUGCgCGCUg -3'
miRNA:   3'- -ACGGUGGaC-GGU-CGCGaCGCGgGCGA- -5'
26272 5' -64.6 NC_005345.2 + 47974 0.71 0.103581
Target:  5'- aGCCGCCcGUguGCGCcGCGCaCGCUc -3'
miRNA:   3'- aCGGUGGaCGguCGCGaCGCGgGCGA- -5'
26272 5' -64.6 NC_005345.2 + 47105 0.7 0.109397
Target:  5'- gGcCCGCCggGCC-GCGCcGgGCCCGCUc -3'
miRNA:   3'- aC-GGUGGa-CGGuCGCGaCgCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 45913 0.71 0.100507
Target:  5'- cGCCGCgUGCaCAguGCGCUGCccgaacuGUCCGCUg -3'
miRNA:   3'- aCGGUGgACG-GU--CGCGACG-------CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 45727 0.69 0.132244
Target:  5'- cGCCGCCcGCC-GC-C-GCGCCCGCc -3'
miRNA:   3'- aCGGUGGaCGGuCGcGaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 45504 0.66 0.229188
Target:  5'- gGCCGCUgccGCCGG-GCUGCGgacggcacaCCUGCg -3'
miRNA:   3'- aCGGUGGa--CGGUCgCGACGC---------GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 44960 0.73 0.062916
Target:  5'- cGCCGCCUGCaCGGC-CUGCcGcCCCGUg -3'
miRNA:   3'- aCGGUGGACG-GUCGcGACG-C-GGGCGa -5'
26272 5' -64.6 NC_005345.2 + 44219 0.69 0.125301
Target:  5'- cGCCACCcgGCCggAGCGCacgUGCGgCUGCc -3'
miRNA:   3'- aCGGUGGa-CGG--UCGCG---ACGCgGGCGa -5'
26272 5' -64.6 NC_005345.2 + 44155 0.68 0.151178
Target:  5'- cGUCACCaugGCgAGCGCguuCGUCCGCa -3'
miRNA:   3'- aCGGUGGa--CGgUCGCGac-GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 43671 0.66 0.24104
Target:  5'- cUGCCGCC-GCCGGgugGCUGaucaGCCuCGCc -3'
miRNA:   3'- -ACGGUGGaCGGUCg--CGACg---CGG-GCGa -5'
26272 5' -64.6 NC_005345.2 + 43503 0.66 0.223449
Target:  5'- cGCCGCCaagGUCgcGGCGaacccgGCGCUCGCg -3'
miRNA:   3'- aCGGUGGa--CGG--UCGCga----CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 43380 0.66 0.24104
Target:  5'- gGCaCGCCgagcaCCuGCGcCUGCGCCCGg- -3'
miRNA:   3'- aCG-GUGGac---GGuCGC-GACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 42790 0.66 0.24104
Target:  5'- cGCCACCgcgGCCaacccGGCGC--CGCUCGUg -3'
miRNA:   3'- aCGGUGGa--CGG-----UCGCGacGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 42679 0.67 0.201702
Target:  5'- cGCCGCCguaCAGCuCgGCgGCCCGCUc -3'
miRNA:   3'- aCGGUGGacgGUCGcGaCG-CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 42158 0.67 0.196561
Target:  5'- cGCUGCCUGUCGGCGCccgGCCaGCa -3'
miRNA:   3'- aCGGUGGACGGUCGCGacgCGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 41805 0.71 0.0954
Target:  5'- cGCCACCgcggGCCAcaccGCGUgcgacucgGCGUCCGCc -3'
miRNA:   3'- aCGGUGGa---CGGU----CGCGa-------CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 41315 0.66 0.24104
Target:  5'- gUGaUCAgCUGCCgAGCGCccUGCGUCuCGCUc -3'
miRNA:   3'- -AC-GGUgGACGG-UCGCG--ACGCGG-GCGA- -5'
26272 5' -64.6 NC_005345.2 + 41298 0.7 0.118697
Target:  5'- gGCCGCCucggUGCCGGCGCcgGCGgCUGg- -3'
miRNA:   3'- aCGGUGG----ACGGUCGCGa-CGCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 41080 0.71 0.098057
Target:  5'- gGCCGCCUGCuCGGCGgcgagcuugauCUGCaGCUCGUg -3'
miRNA:   3'- aCGGUGGACG-GUCGC-----------GACG-CGGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.