Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26272 | 5' | -64.6 | NC_005345.2 | + | 36602 | 1.06 | 0.000137 |
Target: 5'- aUGCCACCUGCCAGCGCUGCGCCCGCUc -3' miRNA: 3'- -ACGGUGGACGGUCGCGACGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 21934 | 0.82 | 0.011733 |
Target: 5'- -cCCACCUGCgAGCGCUGCGCcgaCCGCUg -3' miRNA: 3'- acGGUGGACGgUCGCGACGCG---GGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 9083 | 0.76 | 0.037881 |
Target: 5'- gGCCGCCgucGCCGGCGac-CGCCCGCa -3' miRNA: 3'- aCGGUGGa--CGGUCGCgacGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 21498 | 0.76 | 0.038971 |
Target: 5'- cGCCcggagaACCUGCaAGCGCUGUGCCgGCa -3' miRNA: 3'- aCGG------UGGACGgUCGCGACGCGGgCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 8125 | 0.74 | 0.054684 |
Target: 5'- gGCCGCCgucgucgacgGCUcuuGGcCGCUGCGCCCGUg -3' miRNA: 3'- aCGGUGGa---------CGG---UC-GCGACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 11576 | 0.74 | 0.051693 |
Target: 5'- cGCCugCaGCCcGC-CUGCGCCCGCc -3' miRNA: 3'- aCGGugGaCGGuCGcGACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 11420 | 0.73 | 0.061179 |
Target: 5'- cGCCgACCaGCCGGCGCcGCGCCgcaGCg -3' miRNA: 3'- aCGG-UGGaCGGUCGCGaCGCGGg--CGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 44960 | 0.73 | 0.062916 |
Target: 5'- cGCCGCCUGCaCGGC-CUGCcGcCCCGUg -3' miRNA: 3'- aCGGUGGACG-GUCGcGACG-C-GGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 37557 | 0.73 | 0.068417 |
Target: 5'- gGCCGCCccacGCCAcCGCgagGCGCCCGUc -3' miRNA: 3'- aCGGUGGa---CGGUcGCGa--CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 5228 | 0.73 | 0.061179 |
Target: 5'- gGCCgGCCUgaucGCCGacGCGCUGCGCgCCGCc -3' miRNA: 3'- aCGG-UGGA----CGGU--CGCGACGCG-GGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 36467 | 0.72 | 0.078411 |
Target: 5'- cGCCACUcucgccgugucggUGCCgugggGGCGCaguucagccagUGCGCCCGCUc -3' miRNA: 3'- aCGGUGG-------------ACGG-----UCGCG-----------ACGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 31590 | 0.72 | 0.08311 |
Target: 5'- cUGCCGggcCCUGCuCGGCGCg--GCCCGCg -3' miRNA: 3'- -ACGGU---GGACG-GUCGCGacgCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 37706 | 0.72 | 0.076476 |
Target: 5'- cGCCAguCCUGCgggaucgcgcugCGGCGCgGCGCCgGCUg -3' miRNA: 3'- aCGGU--GGACG------------GUCGCGaCGCGGgCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 13860 | 0.71 | 0.103581 |
Target: 5'- gGCCGuCCacaGCCA-CGUUGCGCCUGCUc -3' miRNA: 3'- aCGGU-GGa--CGGUcGCGACGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 41805 | 0.71 | 0.0954 |
Target: 5'- cGCCACCgcggGCCAcaccGCGUgcgacucgGCGUCCGCc -3' miRNA: 3'- aCGGUGGa---CGGU----CGCGa-------CGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 26041 | 0.71 | 0.09029 |
Target: 5'- cGCCGCCUcgcucGCCucGGCGa-GCGCCUGCUc -3' miRNA: 3'- aCGGUGGA-----CGG--UCGCgaCGCGGGCGA- -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 39725 | 0.71 | 0.100783 |
Target: 5'- gGCCacgacACCUuugacaGCCGGUcccGCUGCGCCUGCg -3' miRNA: 3'- aCGG-----UGGA------CGGUCG---CGACGCGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 20793 | 0.71 | 0.098057 |
Target: 5'- cGCCGcCCUGUCGGCGCcgacgGCGCgugUCGCg -3' miRNA: 3'- aCGGU-GGACGGUCGCGa----CGCG---GGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 41080 | 0.71 | 0.098057 |
Target: 5'- gGCCGCCUGCuCGGCGgcgagcuugauCUGCaGCUCGUg -3' miRNA: 3'- aCGGUGGACG-GUCGC-----------GACG-CGGGCGa -5' |
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26272 | 5' | -64.6 | NC_005345.2 | + | 17968 | 0.71 | 0.100783 |
Target: 5'- gGCCGCCUGCCGG-GCcGCGgccucgaucuCCCGUg -3' miRNA: 3'- aCGGUGGACGGUCgCGaCGC----------GGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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