miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26272 5' -64.6 NC_005345.2 + 12771 0.67 0.181819
Target:  5'- cGCCGCg-GCC-GCGgaGCgcGCCCGCg -3'
miRNA:   3'- aCGGUGgaCGGuCGCgaCG--CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 27208 0.67 0.20696
Target:  5'- gGCaGCggGUCGGCGCaGCGCUCGCa -3'
miRNA:   3'- aCGgUGgaCGGUCGCGaCGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 1468 0.67 0.201702
Target:  5'- aUGCCGUCgGCCGugauGCGgaGCgGCCCGCg -3'
miRNA:   3'- -ACGGUGGaCGGU----CGCgaCG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 42679 0.67 0.201702
Target:  5'- cGCCGCCguaCAGCuCgGCgGCCCGCUc -3'
miRNA:   3'- aCGGUGGacgGUCGcGaCG-CGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 38362 0.67 0.196561
Target:  5'- gGuCCGCCUGCCgcAGCGCgGCugucucgacgGCCgGCa -3'
miRNA:   3'- aC-GGUGGACGG--UCGCGaCG----------CGGgCGa -5'
26272 5' -64.6 NC_005345.2 + 8965 0.67 0.191534
Target:  5'- cUGCaCGCCgGCCucgaucGCaGCUGCGCgCCGUa -3'
miRNA:   3'- -ACG-GUGGaCGGu-----CG-CGACGCG-GGCGa -5'
26272 5' -64.6 NC_005345.2 + 7777 0.67 0.186621
Target:  5'- gGCguCCaugaguccguUGCCgAGCGCUGCGCcgCCGCc -3'
miRNA:   3'- aCGguGG----------ACGG-UCGCGACGCG--GGCGa -5'
26272 5' -64.6 NC_005345.2 + 5845 0.67 0.186621
Target:  5'- aGCCugCUGUgCAGUuccuuaaguuGCcGCGCCUGCUc -3'
miRNA:   3'- aCGGugGACG-GUCG----------CGaCGCGGGCGA- -5'
26272 5' -64.6 NC_005345.2 + 8020 0.67 0.184687
Target:  5'- aGCCGCCagucggaGCCccguaccgcgggcGUGCUGCgGCCCGCg -3'
miRNA:   3'- aCGGUGGa------CGGu------------CGCGACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 5207 0.66 0.211793
Target:  5'- gGCacgGCCgGcCCGGCGCUacacgccgucgggGUGCCCGCg -3'
miRNA:   3'- aCGg--UGGaC-GGUCGCGA-------------CGCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 13729 0.66 0.217832
Target:  5'- cGCCACacguaCUGCagGGCGgUGCcgaccGCCCGCa -3'
miRNA:   3'- aCGGUG-----GACGg-UCGCgACG-----CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 14542 0.66 0.229188
Target:  5'- cGCgCACCcaguugacGCCGGCGCUgaacGCGUCCGaCa -3'
miRNA:   3'- aCG-GUGGa-------CGGUCGCGA----CGCGGGC-Ga -5'
26272 5' -64.6 NC_005345.2 + 43380 0.66 0.24104
Target:  5'- gGCaCGCCgagcaCCuGCGcCUGCGCCCGg- -3'
miRNA:   3'- aCG-GUGGac---GGuCGC-GACGCGGGCga -5'
26272 5' -64.6 NC_005345.2 + 9050 0.66 0.24104
Target:  5'- gUGaCACCgagcagGCgCGGCGCcauUGCuGCCCGCg -3'
miRNA:   3'- -ACgGUGGa-----CG-GUCGCG---ACG-CGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 41315 0.66 0.24104
Target:  5'- gUGaUCAgCUGCCgAGCGCccUGCGUCuCGCUc -3'
miRNA:   3'- -AC-GGUgGACGG-UCGCG--ACGCGG-GCGA- -5'
26272 5' -64.6 NC_005345.2 + 1990 0.66 0.235051
Target:  5'- gUGCCGCa-GgCGGCGCUcacaGCGCCCccucGCUc -3'
miRNA:   3'- -ACGGUGgaCgGUCGCGA----CGCGGG----CGA- -5'
26272 5' -64.6 NC_005345.2 + 542 0.66 0.235051
Target:  5'- aUGCCcuCCgaacaGCCGGCGUggguccuCGCCCGCc -3'
miRNA:   3'- -ACGGu-GGa----CGGUCGCGac-----GCGGGCGa -5'
26272 5' -64.6 NC_005345.2 + 29332 0.66 0.235051
Target:  5'- gGCCGCCccgggUGUCAGCGCUcGuCGCCgucgGCg -3'
miRNA:   3'- aCGGUGG-----ACGGUCGCGA-C-GCGGg---CGa -5'
26272 5' -64.6 NC_005345.2 + 10096 0.66 0.235051
Target:  5'- cGCCGCCUGCgUAGCGCccacCGgCCGg- -3'
miRNA:   3'- aCGGUGGACG-GUCGCGac--GCgGGCga -5'
26272 5' -64.6 NC_005345.2 + 20762 0.66 0.229188
Target:  5'- cUGCCGCCgcGgCGGCGC-GUGCCCu-- -3'
miRNA:   3'- -ACGGUGGa-CgGUCGCGaCGCGGGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.