miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 3' -54.9 NC_005345.2 + 45470 0.66 0.688878
Target:  5'- -cGGCGGccgGGGUGGGC-AUgUCGGCg -3'
miRNA:   3'- caCCGCUag-UCUACCCGcUAgAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 12700 0.67 0.655566
Target:  5'- aGUGGCGGU--GGUGGGCGAUgcagcccgugUUCGcCg -3'
miRNA:   3'- -CACCGCUAguCUACCCGCUA----------GAGCuG- -5'
26273 3' -54.9 NC_005345.2 + 11817 0.67 0.655566
Target:  5'- -cGGCGuucgacaacCGGAccgUGGGCGAggUCGACg -3'
miRNA:   3'- caCCGCua-------GUCU---ACCCGCUagAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 32117 0.67 0.633227
Target:  5'- -gGGCaGcgCGGGUgcgaGGGCGAUCgccUCGGCg -3'
miRNA:   3'- caCCG-CuaGUCUA----CCCGCUAG---AGCUG- -5'
26273 3' -54.9 NC_005345.2 + 37582 0.67 0.633227
Target:  5'- -aGGCGGgcugCAGgcGGGCGAccggCUCG-Cg -3'
miRNA:   3'- caCCGCUa---GUCuaCCCGCUa---GAGCuG- -5'
26273 3' -54.9 NC_005345.2 + 36528 0.67 0.622051
Target:  5'- cUGGCGu--GGGUGGGCGAaCgCGGCc -3'
miRNA:   3'- cACCGCuagUCUACCCGCUaGaGCUG- -5'
26273 3' -54.9 NC_005345.2 + 22690 0.67 0.610884
Target:  5'- cGUGGCGGUgaAGcgGGGCGG-CgugUGGCa -3'
miRNA:   3'- -CACCGCUAg-UCuaCCCGCUaGa--GCUG- -5'
26273 3' -54.9 NC_005345.2 + 5593 0.67 0.598623
Target:  5'- -aGGCGGUCGGcgagcuuGUcGGCGAcgagCUCGGCg -3'
miRNA:   3'- caCCGCUAGUC-------UAcCCGCUa---GAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 21320 0.68 0.577535
Target:  5'- cGUGaGCGG-CGGAUGGGuCGAcagcgaUCGACg -3'
miRNA:   3'- -CAC-CGCUaGUCUACCC-GCUag----AGCUG- -5'
26273 3' -54.9 NC_005345.2 + 42294 0.68 0.577535
Target:  5'- -cGGCGcGUC--GUGGGCGuccCUCGACa -3'
miRNA:   3'- caCCGC-UAGucUACCCGCua-GAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 3792 0.68 0.5665
Target:  5'- cGUGGCGAUCAcgucGAcGGGCaGAUCgaGGCc -3'
miRNA:   3'- -CACCGCUAGU----CUaCCCG-CUAGagCUG- -5'
26273 3' -54.9 NC_005345.2 + 43514 0.68 0.5665
Target:  5'- gGUGcCGAUCGGGUcGGCGAUCaccgcgUCGGCc -3'
miRNA:   3'- -CACcGCUAGUCUAcCCGCUAG------AGCUG- -5'
26273 3' -54.9 NC_005345.2 + 30381 0.68 0.5665
Target:  5'- -cGGCGGgcgCAGGUcGaGGCGuacCUCGACg -3'
miRNA:   3'- caCCGCUa--GUCUA-C-CCGCua-GAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 34993 0.68 0.555519
Target:  5'- aUGGuCGGUCugc-GGGCGGUCggCGACg -3'
miRNA:   3'- cACC-GCUAGucuaCCCGCUAGa-GCUG- -5'
26273 3' -54.9 NC_005345.2 + 34630 0.69 0.491211
Target:  5'- -cGGCGGUCGGGgcGGuGCGcugcucccgGUCUCGGCc -3'
miRNA:   3'- caCCGCUAGUCUa-CC-CGC---------UAGAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 32773 0.69 0.484963
Target:  5'- gGUGGCGGcgCAGAgcggcgacgccgcGGCGAUgCUCGGCg -3'
miRNA:   3'- -CACCGCUa-GUCUac-----------CCGCUA-GAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 15843 0.7 0.470533
Target:  5'- -gGGCGcgggcccgcUCGcGGUGGGCGAgcagCUCGGCg -3'
miRNA:   3'- caCCGCu--------AGU-CUACCCGCUa---GAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 43683 0.72 0.356997
Target:  5'- gGUGGCuGAUCAGccucgccgcGUGGGCcGGcCUCGACc -3'
miRNA:   3'- -CACCG-CUAGUC---------UACCCG-CUaGAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 38517 0.73 0.305577
Target:  5'- aUGGCGAgccccgGGGUGGGCccguaccgacagaaGGUCUCGGCg -3'
miRNA:   3'- cACCGCUag----UCUACCCG--------------CUAGAGCUG- -5'
26273 3' -54.9 NC_005345.2 + 38599 0.83 0.066863
Target:  5'- cGUGGCGAgcgccUCGGAcacGGCGAUCUCGACg -3'
miRNA:   3'- -CACCGCU-----AGUCUac-CCGCUAGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.