miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 48696 0.68 0.298021
Target:  5'- aGGCUGCAggccUCGCCCgcgaggugaagaACCgggacACCGgCCGCa -3'
miRNA:   3'- cCCGACGU----AGCGGG------------UGG-----UGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 11287 0.68 0.298021
Target:  5'- cGGGCcugaGCcUCGCCgGCCgcgACCGaCCGCa -3'
miRNA:   3'- -CCCGa---CGuAGCGGgUGG---UGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 18546 0.68 0.298021
Target:  5'- uGGGCUGCucggggCGCUCGCCggguGCgCGCCcaGCg -3'
miRNA:   3'- -CCCGACGua----GCGGGUGG----UG-GCGG--UGa -5'
26273 5' -61.1 NC_005345.2 + 2805 0.68 0.298021
Target:  5'- cGGCgUGCGcucgaUCGCCUgcuCCAgCGCCGCg -3'
miRNA:   3'- cCCG-ACGU-----AGCGGGu--GGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 20771 0.68 0.298021
Target:  5'- cGGCgGCGcgUGCCCugguauCCGCCGCC-CUg -3'
miRNA:   3'- cCCGaCGUa-GCGGGu-----GGUGGCGGuGA- -5'
26273 5' -61.1 NC_005345.2 + 17508 0.68 0.297298
Target:  5'- cGGGCcGCcgGUCGCCgGCCGggcgaggaccgugUCGCCAUg -3'
miRNA:   3'- -CCCGaCG--UAGCGGgUGGU-------------GGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 17014 0.68 0.290848
Target:  5'- cGGGCUGCcgccgaggcgAUCGCCCucgcACCcgcGCUGCC-Cg -3'
miRNA:   3'- -CCCGACG----------UAGCGGG----UGG---UGGCGGuGa -5'
26273 5' -61.1 NC_005345.2 + 21454 0.68 0.290848
Target:  5'- aGGGCUGCcgUGUCgGCgCGCCcgGUCACg -3'
miRNA:   3'- -CCCGACGuaGCGGgUG-GUGG--CGGUGa -5'
26273 5' -61.1 NC_005345.2 + 23405 0.68 0.290848
Target:  5'- -aGCcGguUCGCCUGCCACCaCCGCg -3'
miRNA:   3'- ccCGaCguAGCGGGUGGUGGcGGUGa -5'
26273 5' -61.1 NC_005345.2 + 39640 0.68 0.283811
Target:  5'- cGGuCUGCGcgcacaggGCCCGCgACUGCCACUc -3'
miRNA:   3'- cCC-GACGUag------CGGGUGgUGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 16889 0.68 0.283811
Target:  5'- uGGCgGCGgaaggCGCCCgucgaggcACUGCUGCCGCUg -3'
miRNA:   3'- cCCGaCGUa----GCGGG--------UGGUGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 3717 0.68 0.283811
Target:  5'- cGGCgaggUGCAgcugaucguUCGCCCG-CGCCGCCugUc -3'
miRNA:   3'- cCCG----ACGU---------AGCGGGUgGUGGCGGugA- -5'
26273 5' -61.1 NC_005345.2 + 27298 0.68 0.27691
Target:  5'- --cCUGCAgcUCGCCCGCaCGCaUGCCGCg -3'
miRNA:   3'- cccGACGU--AGCGGGUG-GUG-GCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 1253 0.68 0.270814
Target:  5'- cGGGCUGCGgcacgauccacagcaCGCCgGCCgacgucACCGUCGCc -3'
miRNA:   3'- -CCCGACGUa--------------GCGGgUGG------UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 22251 0.68 0.270143
Target:  5'- cGGCgagcgccgccUGCAgCGCCuCACCcaucgaccgcACCGCCGCUg -3'
miRNA:   3'- cCCG----------ACGUaGCGG-GUGG----------UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 33298 0.68 0.26351
Target:  5'- -aGCUGC-UCGCCCACCGCgagcgggcccgCGCC-Ca -3'
miRNA:   3'- ccCGACGuAGCGGGUGGUG-----------GCGGuGa -5'
26273 5' -61.1 NC_005345.2 + 22014 0.68 0.26351
Target:  5'- cGGGCaGCucgaCGCCgGCCGgUGCCGCc -3'
miRNA:   3'- -CCCGaCGua--GCGGgUGGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 34230 0.69 0.25701
Target:  5'- -cGCUGCAgcCGCCgCGCCGCgGcCCGCUu -3'
miRNA:   3'- ccCGACGUa-GCGG-GUGGUGgC-GGUGA- -5'
26273 5' -61.1 NC_005345.2 + 45516 0.69 0.25701
Target:  5'- cGGGCUGCGgaCGgCaCACCugCGgCGCg -3'
miRNA:   3'- -CCCGACGUa-GCgG-GUGGugGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 43898 0.69 0.250642
Target:  5'- -cGCUGCAUCGCCaCGCgGCgCGCaGCg -3'
miRNA:   3'- ccCGACGUAGCGG-GUGgUG-GCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.