miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 1171 0.67 0.343927
Target:  5'- cGGCUGCGcCuCCCACCACaguuuccaCCACUg -3'
miRNA:   3'- cCCGACGUaGcGGGUGGUGgc------GGUGA- -5'
26273 5' -61.1 NC_005345.2 + 38236 0.67 0.343927
Target:  5'- cGGGCUGgGUUGCCgagucgaaCACgACgGUCACa -3'
miRNA:   3'- -CCCGACgUAGCGG--------GUGgUGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14405 0.67 0.343927
Target:  5'- cGGCUGCAcgUCGCCgACgC-CUGCCGg- -3'
miRNA:   3'- cCCGACGU--AGCGGgUG-GuGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 35937 0.67 0.343927
Target:  5'- gGGGC-GCGgggugUGCUCGCCgcgcggGCUGCCGCUc -3'
miRNA:   3'- -CCCGaCGUa----GCGGGUGG------UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 712 0.67 0.343927
Target:  5'- cGGGCucuUGCuccagAUCGCCCA-CGCCGUCGa- -3'
miRNA:   3'- -CCCG---ACG-----UAGCGGGUgGUGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 9778 0.67 0.331204
Target:  5'- cGGCgGCAUCGCgCAUcucgaucucguagcgCACgGCCACg -3'
miRNA:   3'- cCCGaCGUAGCGgGUG---------------GUGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 8805 0.67 0.328078
Target:  5'- cGGCcGUacccGUCGCCCGCCACgG-CGCg -3'
miRNA:   3'- cCCGaCG----UAGCGGGUGGUGgCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 46464 0.67 0.328078
Target:  5'- aGGCUG-AUC-CCgCGCC-CCGCCGCa -3'
miRNA:   3'- cCCGACgUAGcGG-GUGGuGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 8568 0.67 0.328078
Target:  5'- cGGCUGCgAUCGUCCauGCgGgCGUCACa -3'
miRNA:   3'- cCCGACG-UAGCGGG--UGgUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 30714 0.67 0.320358
Target:  5'- cGGGCgcaGguUCGCCCACagaauCACgGCCGu- -3'
miRNA:   3'- -CCCGa--CguAGCGGGUG-----GUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 27159 0.67 0.320358
Target:  5'- aGGcGCUGCGcggCGuCCCGCCggaggaggucuACCGCCGg- -3'
miRNA:   3'- -CC-CGACGUa--GC-GGGUGG-----------UGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 11088 0.67 0.312776
Target:  5'- cGGCgGCGcaaUC-CCCGCCACCGCgAUc -3'
miRNA:   3'- cCCGaCGU---AGcGGGUGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 16515 0.67 0.312776
Target:  5'- -uGCUcGCGUgGCUCcgcauGCCGCUGCCGCUg -3'
miRNA:   3'- ccCGA-CGUAgCGGG-----UGGUGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 14672 0.67 0.312776
Target:  5'- cGGGCgGCGUCGCCgauGCCggGCCgGCCGu- -3'
miRNA:   3'- -CCCGaCGUAGCGGg--UGG--UGG-CGGUga -5'
26273 5' -61.1 NC_005345.2 + 14967 0.67 0.308292
Target:  5'- cGGCUGaucaGUCGgucggggcCCCgggccacuccucgggGCCGCCGCCGCg -3'
miRNA:   3'- cCCGACg---UAGC--------GGG---------------UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14117 0.67 0.30533
Target:  5'- cGGCgacaGgAUCGUCUGCCACaGCCACa -3'
miRNA:   3'- cCCGa---CgUAGCGGGUGGUGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14727 0.67 0.30533
Target:  5'- -aGC-GCGUCGCCCAUCcgguCCGCgGCg -3'
miRNA:   3'- ccCGaCGUAGCGGGUGGu---GGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 19139 0.67 0.30533
Target:  5'- cGGGCcGCAUgGCgCGCCACCcggaccccgGCCGa- -3'
miRNA:   3'- -CCCGaCGUAgCGgGUGGUGG---------CGGUga -5'
26273 5' -61.1 NC_005345.2 + 5192 0.67 0.30533
Target:  5'- cGGGCUGCA-CGCaUCGgCACgGCCGg- -3'
miRNA:   3'- -CCCGACGUaGCG-GGUgGUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 42510 0.67 0.304593
Target:  5'- -aGCUGCucggugacgccGUCGCaCCGCCgggcgcaACCGCCGCc -3'
miRNA:   3'- ccCGACG-----------UAGCG-GGUGG-------UGGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.