miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 9778 0.67 0.331204
Target:  5'- cGGCgGCAUCGCgCAUcucgaucucguagcgCACgGCCACg -3'
miRNA:   3'- cCCGaCGUAGCGgGUG---------------GUGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 10409 0.66 0.352055
Target:  5'- cGGGCgaGgGUCGCCaccccggaUACCACCGuCCAg- -3'
miRNA:   3'- -CCCGa-CgUAGCGG--------GUGGUGGC-GGUga -5'
26273 5' -61.1 NC_005345.2 + 11088 0.67 0.312776
Target:  5'- cGGCgGCGcaaUC-CCCGCCACCGCgAUc -3'
miRNA:   3'- cCCGaCGU---AGcGGGUGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 11287 0.68 0.298021
Target:  5'- cGGGCcugaGCcUCGCCgGCCgcgACCGaCCGCa -3'
miRNA:   3'- -CCCGa---CGuAGCGGgUGG---UGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 12619 0.74 0.10156
Target:  5'- gGGGCcGCGuUCGCCCACC-CaCGCCAg- -3'
miRNA:   3'- -CCCGaCGU-AGCGGGUGGuG-GCGGUga -5'
26273 5' -61.1 NC_005345.2 + 12890 0.66 0.368717
Target:  5'- uGGCcGC-UCGCCUcgAUCGCCGCgACg -3'
miRNA:   3'- cCCGaCGuAGCGGG--UGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 14117 0.67 0.30533
Target:  5'- cGGCgacaGgAUCGUCUGCCACaGCCACa -3'
miRNA:   3'- cCCGa---CgUAGCGGGUGGUGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14146 0.69 0.238296
Target:  5'- cGGCaGCGUCGCCgACCGcCCGCa--- -3'
miRNA:   3'- cCCGaCGUAGCGGgUGGU-GGCGguga -5'
26273 5' -61.1 NC_005345.2 + 14387 0.7 0.20965
Target:  5'- -cGCguaGCcgCGCgucaCCGCCGCCGCCGCg -3'
miRNA:   3'- ccCGa--CGuaGCG----GGUGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14405 0.67 0.343927
Target:  5'- cGGCUGCAcgUCGCCgACgC-CUGCCGg- -3'
miRNA:   3'- cCCGACGU--AGCGGgUG-GuGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 14516 0.72 0.144817
Target:  5'- cGGgaGCAgCGCaCCGCCccgACCGCCGCa -3'
miRNA:   3'- cCCgaCGUaGCG-GGUGG---UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14672 0.67 0.312776
Target:  5'- cGGGCgGCGUCGCCgauGCCggGCCgGCCGu- -3'
miRNA:   3'- -CCCGaCGUAGCGGg--UGG--UGG-CGGUga -5'
26273 5' -61.1 NC_005345.2 + 14727 0.67 0.30533
Target:  5'- -aGC-GCGUCGCCCAUCcgguCCGCgGCg -3'
miRNA:   3'- ccCGaCGUAGCGGGUGGu---GGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 14854 0.69 0.226463
Target:  5'- cGGGCUGCAgcgggCGCUCGaCGCgGCCGa- -3'
miRNA:   3'- -CCCGACGUa----GCGGGUgGUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 14967 0.67 0.308292
Target:  5'- cGGCUGaucaGUCGgucggggcCCCgggccacuccucgggGCCGCCGCCGCg -3'
miRNA:   3'- cCCGACg---UAGC--------GGG---------------UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 15072 0.71 0.164237
Target:  5'- cGGcCUGCAgCGCCUgcgugaucaggccuACCGCCGCCugUc -3'
miRNA:   3'- cCC-GACGUaGCGGG--------------UGGUGGCGGugA- -5'
26273 5' -61.1 NC_005345.2 + 15709 0.66 0.377249
Target:  5'- uGGUgacacaccuUGCGggcCGCCCGCCACC-CUGCUg -3'
miRNA:   3'- cCCG---------ACGUa--GCGGGUGGUGGcGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 15765 0.71 0.184023
Target:  5'- -uGCUGCAUCguauccgggGCCgCGCCACCGCCc-- -3'
miRNA:   3'- ccCGACGUAG---------CGG-GUGGUGGCGGuga -5'
26273 5' -61.1 NC_005345.2 + 15805 0.7 0.20965
Target:  5'- uGGGCgGCA-CGCCgGCUA-CGCCGCg -3'
miRNA:   3'- -CCCGaCGUaGCGGgUGGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 16351 0.7 0.20965
Target:  5'- cGGCgGCAUCG-CgGCCGgCGCCGCg -3'
miRNA:   3'- cCCGaCGUAGCgGgUGGUgGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.