miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 37766 0.72 0.156956
Target:  5'- -aGCUGC-UCGCCCGCagGCgGCCGCg -3'
miRNA:   3'- ccCGACGuAGCGGGUGg-UGgCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 40461 0.72 0.156956
Target:  5'- cGGGCcGCccaCGUCacgGCCACCGCCGCg -3'
miRNA:   3'- -CCCGaCGua-GCGGg--UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 25682 0.72 0.160345
Target:  5'- cGGcCUGCGgcgacucaauccacaUCGCCCACCACUcgcgggugcgcucggGCCACa -3'
miRNA:   3'- cCC-GACGU---------------AGCGGGUGGUGG---------------CGGUGa -5'
26273 5' -61.1 NC_005345.2 + 43804 0.72 0.161203
Target:  5'- cGGGCaGCG-CGCCCACggCACCG-CACUg -3'
miRNA:   3'- -CCCGaCGUaGCGGGUG--GUGGCgGUGA- -5'
26273 5' -61.1 NC_005345.2 + 15072 0.71 0.164237
Target:  5'- cGGcCUGCAgCGCCUgcgugaucaggccuACCGCCGCCugUc -3'
miRNA:   3'- cCC-GACGUaGCGGG--------------UGGUGGCGGugA- -5'
26273 5' -61.1 NC_005345.2 + 43979 0.71 0.170008
Target:  5'- cGGCgGC-UCGCCCgacucgucgGCCGCCGCgGCg -3'
miRNA:   3'- cCCGaCGuAGCGGG---------UGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 40409 0.71 0.170008
Target:  5'- -uGCUGCAgucgucgCGCUCGCCACCGaCGCg -3'
miRNA:   3'- ccCGACGUa------GCGGGUGGUGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 17210 0.71 0.179241
Target:  5'- cGGGUUGUcgguGUCGCCgGCCaucaGCUGUCACUu -3'
miRNA:   3'- -CCCGACG----UAGCGGgUGG----UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 2777 0.71 0.179241
Target:  5'- uGGCUGC-UCG-CCGCCGCCcuucgugaGCCGCUc -3'
miRNA:   3'- cCCGACGuAGCgGGUGGUGG--------CGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 15765 0.71 0.184023
Target:  5'- -uGCUGCAUCguauccgggGCCgCGCCACCGCCc-- -3'
miRNA:   3'- ccCGACGUAG---------CGG-GUGGUGGCGGuga -5'
26273 5' -61.1 NC_005345.2 + 4274 0.71 0.188917
Target:  5'- -uGCUGCGccUCGCgaCGCgGCCGCCGCg -3'
miRNA:   3'- ccCGACGU--AGCGg-GUGgUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 26899 0.7 0.193925
Target:  5'- aGGcGCUGCAggcggCGCUCGCCgACCGgUACg -3'
miRNA:   3'- -CC-CGACGUa----GCGGGUGG-UGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 9689 0.7 0.199048
Target:  5'- cGGCUGCAg-GCCgAUCagcggGCCGCCGCg -3'
miRNA:   3'- cCCGACGUagCGGgUGG-----UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 28148 0.7 0.202705
Target:  5'- cGGCgaacGCGUCGCCCggucggcguuccucGCCGCgGCCAa- -3'
miRNA:   3'- cCCGa---CGUAGCGGG--------------UGGUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 16351 0.7 0.20965
Target:  5'- cGGCgGCAUCG-CgGCCGgCGCCGCg -3'
miRNA:   3'- cCCGaCGUAGCgGgUGGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 15805 0.7 0.20965
Target:  5'- uGGGCgGCA-CGCCgGCUA-CGCCGCg -3'
miRNA:   3'- -CCCGaCGUaGCGGgUGGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14387 0.7 0.20965
Target:  5'- -cGCguaGCcgCGCgucaCCGCCGCCGCCGCg -3'
miRNA:   3'- ccCGa--CGuaGCG----GGUGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 247 0.7 0.220735
Target:  5'- cGGgaGcCAUCGCCgcccgCACCuucGCCGCCACg -3'
miRNA:   3'- cCCgaC-GUAGCGG-----GUGG---UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 23773 0.7 0.220735
Target:  5'- cGGCgaucGCGUCGagCCGgCACUGCCACg -3'
miRNA:   3'- cCCGa---CGUAGCg-GGUgGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14854 0.69 0.226463
Target:  5'- cGGGCUGCAgcgggCGCUCGaCGCgGCCGa- -3'
miRNA:   3'- -CCCGACGUa----GCGGGUgGUGgCGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.