miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 36447 1.09 0.000235
Target:  5'- cGGGCUGCAUCGCCCACCACCGCCACUc -3'
miRNA:   3'- -CCCGACGUAGCGGGUGGUGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 45716 0.83 0.023926
Target:  5'- gGGGCccGCAUCGCCgC-CCGCCGCCGCg -3'
miRNA:   3'- -CCCGa-CGUAGCGG-GuGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 41642 0.76 0.074773
Target:  5'- cGGCaGCA-CGCCCACCGaauggcggcCCGCCACUc -3'
miRNA:   3'- cCCGaCGUaGCGGGUGGU---------GGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 20086 0.76 0.076897
Target:  5'- cGGUcucgGCga-GCCCGCCGCCGCCACg -3'
miRNA:   3'- cCCGa---CGuagCGGGUGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 44086 0.75 0.093208
Target:  5'- uGGGCUGCAgcuGCUCacagcggucugcaGCCugCGCCACUg -3'
miRNA:   3'- -CCCGACGUag-CGGG-------------UGGugGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 12619 0.74 0.10156
Target:  5'- gGGGCcGCGuUCGCCCACC-CaCGCCAg- -3'
miRNA:   3'- -CCCGaCGU-AGCGGGUGGuG-GCGGUga -5'
26273 5' -61.1 NC_005345.2 + 16428 0.74 0.107317
Target:  5'- aGGuGCUGCAUCGUCCAgCgGCgGCUGCUg -3'
miRNA:   3'- -CC-CGACGUAGCGGGU-GgUGgCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 1680 0.74 0.11031
Target:  5'- -uGCUGCAUCGCCCACaggUCGCCGa- -3'
miRNA:   3'- ccCGACGUAGCGGGUGgu-GGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 18252 0.73 0.123078
Target:  5'- cGGuGCUGC-UCGCCgGCCgcGCCGUCGCc -3'
miRNA:   3'- -CC-CGACGuAGCGGgUGG--UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 9081 0.73 0.123078
Target:  5'- cGGGCcGcCGUCGCCgGCgACCGcCCGCa -3'
miRNA:   3'- -CCCGaC-GUAGCGGgUGgUGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 3292 0.73 0.123078
Target:  5'- cGGGCUccccGCccccacgaucGUCGCCCgcGCCGCCGCCGu- -3'
miRNA:   3'- -CCCGA----CG----------UAGCGGG--UGGUGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 20008 0.73 0.126478
Target:  5'- gGGGCaGC-UCGCCCAUCACCuUCGCg -3'
miRNA:   3'- -CCCGaCGuAGCGGGUGGUGGcGGUGa -5'
26273 5' -61.1 NC_005345.2 + 16373 0.73 0.126478
Target:  5'- -cGCgGCGUCGCCgcuCugCGCCGCCACc -3'
miRNA:   3'- ccCGaCGUAGCGG---GugGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 26811 0.73 0.129965
Target:  5'- aGGcGCUGC-UCGCCgCAUCACUGCUGCc -3'
miRNA:   3'- -CC-CGACGuAGCGG-GUGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 48366 0.72 0.137206
Target:  5'- cGGGCccggucgGCAUCcCCCGCCGCCgGCCGg- -3'
miRNA:   3'- -CCCGa------CGUAGcGGGUGGUGG-CGGUga -5'
26273 5' -61.1 NC_005345.2 + 34086 0.72 0.140965
Target:  5'- aGGcGCUGCAggccggCGCCCGCgacggcgaCAUCGCCGCc -3'
miRNA:   3'- -CC-CGACGUa-----GCGGGUG--------GUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 2997 0.72 0.140965
Target:  5'- aGGGCUGCccgGUgGaaCCCACCgcguuccgagGCCGCCGCUu -3'
miRNA:   3'- -CCCGACG---UAgC--GGGUGG----------UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 32249 0.72 0.143265
Target:  5'- cGGCaGCAgugccucgacgggCGCCUuCCGCCGCCACg -3'
miRNA:   3'- cCCGaCGUa------------GCGGGuGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 14516 0.72 0.144817
Target:  5'- cGGgaGCAgCGCaCCGCCccgACCGCCGCa -3'
miRNA:   3'- cCCgaCGUaGCG-GGUGG---UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 37512 0.72 0.148765
Target:  5'- cGGGCUGCGgcgcggugCGCUCGCUcuCCGcCCACUc -3'
miRNA:   3'- -CCCGACGUa-------GCGGGUGGu-GGC-GGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.