miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 45716 0.83 0.023926
Target:  5'- gGGGCccGCAUCGCCgC-CCGCCGCCGCg -3'
miRNA:   3'- -CCCGa-CGUAGCGG-GuGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 26899 0.7 0.193925
Target:  5'- aGGcGCUGCAggcggCGCUCGCCgACCGgUACg -3'
miRNA:   3'- -CC-CGACGUa----GCGGGUGG-UGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 28148 0.7 0.202705
Target:  5'- cGGCgaacGCGUCGCCCggucggcguuccucGCCGCgGCCAa- -3'
miRNA:   3'- cCCGa---CGUAGCGGG--------------UGGUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 37476 0.66 0.394706
Target:  5'- -uGCUgaGCAgCGCCCcgaaguuggccGCUACCGCCGCc -3'
miRNA:   3'- ccCGA--CGUaGCGGG-----------UGGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 9081 0.73 0.123078
Target:  5'- cGGGCcGcCGUCGCCgGCgACCGcCCGCa -3'
miRNA:   3'- -CCCGaC-GUAGCGGgUGgUGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 3292 0.73 0.123078
Target:  5'- cGGGCUccccGCccccacgaucGUCGCCCgcGCCGCCGCCGu- -3'
miRNA:   3'- -CCCGA----CG----------UAGCGGG--UGGUGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 48366 0.72 0.137206
Target:  5'- cGGGCccggucgGCAUCcCCCGCCGCCgGCCGg- -3'
miRNA:   3'- -CCCGa------CGUAGcGGGUGGUGG-CGGUga -5'
26273 5' -61.1 NC_005345.2 + 2997 0.72 0.140965
Target:  5'- aGGGCUGCccgGUgGaaCCCACCgcguuccgagGCCGCCGCUu -3'
miRNA:   3'- -CCCGACG---UAgC--GGGUGG----------UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 43804 0.72 0.161203
Target:  5'- cGGGCaGCG-CGCCCACggCACCG-CACUg -3'
miRNA:   3'- -CCCGaCGUaGCGGGUG--GUGGCgGUGA- -5'
26273 5' -61.1 NC_005345.2 + 4274 0.71 0.188917
Target:  5'- -uGCUGCGccUCGCgaCGCgGCCGCCGCg -3'
miRNA:   3'- ccCGACGU--AGCGg-GUGgUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 43979 0.71 0.170008
Target:  5'- cGGCgGC-UCGCCCgacucgucgGCCGCCGCgGCg -3'
miRNA:   3'- cCCGaCGuAGCGGG---------UGGUGGCGgUGa -5'
26273 5' -61.1 NC_005345.2 + 14516 0.72 0.144817
Target:  5'- cGGgaGCAgCGCaCCGCCccgACCGCCGCa -3'
miRNA:   3'- cCCgaCGUaGCG-GGUGG---UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 41642 0.76 0.074773
Target:  5'- cGGCaGCA-CGCCCACCGaauggcggcCCGCCACUc -3'
miRNA:   3'- cCCGaCGUaGCGGGUGGU---------GGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 2777 0.71 0.179241
Target:  5'- uGGCUGC-UCG-CCGCCGCCcuucgugaGCCGCUc -3'
miRNA:   3'- cCCGACGuAGCgGGUGGUGG--------CGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 44086 0.75 0.093208
Target:  5'- uGGGCUGCAgcuGCUCacagcggucugcaGCCugCGCCACUg -3'
miRNA:   3'- -CCCGACGUag-CGGG-------------UGGugGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 34086 0.72 0.140965
Target:  5'- aGGcGCUGCAggccggCGCCCGCgacggcgaCAUCGCCGCc -3'
miRNA:   3'- -CC-CGACGUa-----GCGGGUG--------GUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 15765 0.71 0.184023
Target:  5'- -uGCUGCAUCguauccgggGCCgCGCCACCGCCc-- -3'
miRNA:   3'- ccCGACGUAG---------CGG-GUGGUGGCGGuga -5'
26273 5' -61.1 NC_005345.2 + 9689 0.7 0.199048
Target:  5'- cGGCUGCAg-GCCgAUCagcggGCCGCCGCg -3'
miRNA:   3'- cCCGACGUagCGGgUGG-----UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 18252 0.73 0.123078
Target:  5'- cGGuGCUGC-UCGCCgGCCgcGCCGUCGCc -3'
miRNA:   3'- -CC-CGACGuAGCGGgUGG--UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 26811 0.73 0.129965
Target:  5'- aGGcGCUGC-UCGCCgCAUCACUGCUGCc -3'
miRNA:   3'- -CC-CGACGuAGCGG-GUGGUGGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.