miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26273 5' -61.1 NC_005345.2 + 247 0.7 0.220735
Target:  5'- cGGgaGcCAUCGCCgcccgCACCuucGCCGCCACg -3'
miRNA:   3'- cCCgaC-GUAGCGG-----GUGG---UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 712 0.67 0.343927
Target:  5'- cGGGCucuUGCuccagAUCGCCCA-CGCCGUCGa- -3'
miRNA:   3'- -CCCG---ACG-----UAGCGGGUgGUGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 1171 0.67 0.343927
Target:  5'- cGGCUGCGcCuCCCACCACaguuuccaCCACUg -3'
miRNA:   3'- cCCGACGUaGcGGGUGGUGgc------GGUGA- -5'
26273 5' -61.1 NC_005345.2 + 1253 0.68 0.270814
Target:  5'- cGGGCUGCGgcacgauccacagcaCGCCgGCCgacgucACCGUCGCc -3'
miRNA:   3'- -CCCGACGUa--------------GCGGgUGG------UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 1680 0.74 0.11031
Target:  5'- -uGCUGCAUCGCCCACaggUCGCCGa- -3'
miRNA:   3'- ccCGACGUAGCGGGUGgu-GGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 2777 0.71 0.179241
Target:  5'- uGGCUGC-UCG-CCGCCGCCcuucgugaGCCGCUc -3'
miRNA:   3'- cCCGACGuAGCgGGUGGUGG--------CGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 2805 0.68 0.298021
Target:  5'- cGGCgUGCGcucgaUCGCCUgcuCCAgCGCCGCg -3'
miRNA:   3'- cCCG-ACGU-----AGCGGGu--GGUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 2997 0.72 0.140965
Target:  5'- aGGGCUGCccgGUgGaaCCCACCgcguuccgagGCCGCCGCUu -3'
miRNA:   3'- -CCCGACG---UAgC--GGGUGG----------UGGCGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 3292 0.73 0.123078
Target:  5'- cGGGCUccccGCccccacgaucGUCGCCCgcGCCGCCGCCGu- -3'
miRNA:   3'- -CCCGA----CG----------UAGCGGG--UGGUGGCGGUga -5'
26273 5' -61.1 NC_005345.2 + 3717 0.68 0.283811
Target:  5'- cGGCgaggUGCAgcugaucguUCGCCCG-CGCCGCCugUc -3'
miRNA:   3'- cCCG----ACGU---------AGCGGGUgGUGGCGGugA- -5'
26273 5' -61.1 NC_005345.2 + 4274 0.71 0.188917
Target:  5'- -uGCUGCGccUCGCgaCGCgGCCGCCGCg -3'
miRNA:   3'- ccCGACGU--AGCGg-GUGgUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 4645 0.66 0.377249
Target:  5'- cGGGC--CGUCGCCUGCUgugccucgGCCGUCGCc -3'
miRNA:   3'- -CCCGacGUAGCGGGUGG--------UGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 5192 0.67 0.30533
Target:  5'- cGGGCUGCA-CGCaUCGgCACgGCCGg- -3'
miRNA:   3'- -CCCGACGUaGCG-GGUgGUGgCGGUga -5'
26273 5' -61.1 NC_005345.2 + 7138 0.66 0.37639
Target:  5'- cGGGCgggGCAcgUgGCCCGggacgggucggacCCGCUGUCGCa -3'
miRNA:   3'- -CCCGa--CGU--AgCGGGU-------------GGUGGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 7831 0.66 0.377249
Target:  5'- cGGCgUGUAgggCGUCCAgCCGCCGgCGCc -3'
miRNA:   3'- cCCG-ACGUa--GCGGGU-GGUGGCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 8568 0.67 0.328078
Target:  5'- cGGCUGCgAUCGUCCauGCgGgCGUCACa -3'
miRNA:   3'- cCCGACG-UAGCGGG--UGgUgGCGGUGa -5'
26273 5' -61.1 NC_005345.2 + 8805 0.67 0.328078
Target:  5'- cGGCcGUacccGUCGCCCGCCACgG-CGCg -3'
miRNA:   3'- cCCGaCG----UAGCGGGUGGUGgCgGUGa -5'
26273 5' -61.1 NC_005345.2 + 9081 0.73 0.123078
Target:  5'- cGGGCcGcCGUCGCCgGCgACCGcCCGCa -3'
miRNA:   3'- -CCCGaC-GUAGCGGgUGgUGGC-GGUGa -5'
26273 5' -61.1 NC_005345.2 + 9357 0.66 0.377249
Target:  5'- uGGCUGCGggcggccgggcUCGaCCACUACgggcaGCCGCUg -3'
miRNA:   3'- cCCGACGU-----------AGCgGGUGGUGg----CGGUGA- -5'
26273 5' -61.1 NC_005345.2 + 9689 0.7 0.199048
Target:  5'- cGGCUGCAg-GCCgAUCagcggGCCGCCGCg -3'
miRNA:   3'- cCCGACGUagCGGgUGG-----UGGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.