Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26273 | 5' | -61.1 | NC_005345.2 | + | 14854 | 0.69 | 0.226463 |
Target: 5'- cGGGCUGCAgcgggCGCUCGaCGCgGCCGa- -3' miRNA: 3'- -CCCGACGUa----GCGGGUgGUGgCGGUga -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 28148 | 0.7 | 0.202705 |
Target: 5'- cGGCgaacGCGUCGCCCggucggcguuccucGCCGCgGCCAa- -3' miRNA: 3'- cCCGa---CGUAGCGGG--------------UGGUGgCGGUga -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 14516 | 0.72 | 0.144817 |
Target: 5'- cGGgaGCAgCGCaCCGCCccgACCGCCGCa -3' miRNA: 3'- cCCgaCGUaGCG-GGUGG---UGGCGGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 18252 | 0.73 | 0.123078 |
Target: 5'- cGGuGCUGC-UCGCCgGCCgcGCCGUCGCc -3' miRNA: 3'- -CC-CGACGuAGCGGgUGG--UGGCGGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 16515 | 0.67 | 0.312776 |
Target: 5'- -uGCUcGCGUgGCUCcgcauGCCGCUGCCGCUg -3' miRNA: 3'- ccCGA-CGUAgCGGG-----UGGUGGCGGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 27298 | 0.68 | 0.27691 |
Target: 5'- --cCUGCAgcUCGCCCGCaCGCaUGCCGCg -3' miRNA: 3'- cccGACGU--AGCGGGUG-GUG-GCGGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 26899 | 0.7 | 0.193925 |
Target: 5'- aGGcGCUGCAggcggCGCUCGCCgACCGgUACg -3' miRNA: 3'- -CC-CGACGUa----GCGGGUGG-UGGCgGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 44086 | 0.75 | 0.093208 |
Target: 5'- uGGGCUGCAgcuGCUCacagcggucugcaGCCugCGCCACUg -3' miRNA: 3'- -CCCGACGUag-CGGG-------------UGGugGCGGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 33298 | 0.68 | 0.26351 |
Target: 5'- -aGCUGC-UCGCCCACCGCgagcgggcccgCGCC-Ca -3' miRNA: 3'- ccCGACGuAGCGGGUGGUG-----------GCGGuGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 41642 | 0.76 | 0.074773 |
Target: 5'- cGGCaGCA-CGCCCACCGaauggcggcCCGCCACUc -3' miRNA: 3'- cCCGaCGUaGCGGGUGGU---------GGCGGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 9689 | 0.7 | 0.199048 |
Target: 5'- cGGCUGCAg-GCCgAUCagcggGCCGCCGCg -3' miRNA: 3'- cCCGACGUagCGGgUGG-----UGGCGGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 34219 | 0.69 | 0.232316 |
Target: 5'- gGGGCaGCAguUCGCCCggggcGgCACgGCCGCg -3' miRNA: 3'- -CCCGaCGU--AGCGGG-----UgGUGgCGGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 2777 | 0.71 | 0.179241 |
Target: 5'- uGGCUGC-UCG-CCGCCGCCcuucgugaGCCGCUc -3' miRNA: 3'- cCCGACGuAGCgGGUGGUGG--------CGGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 43804 | 0.72 | 0.161203 |
Target: 5'- cGGGCaGCG-CGCCCACggCACCG-CACUg -3' miRNA: 3'- -CCCGaCGUaGCGGGUG--GUGGCgGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 48366 | 0.72 | 0.137206 |
Target: 5'- cGGGCccggucgGCAUCcCCCGCCGCCgGCCGg- -3' miRNA: 3'- -CCCGa------CGUAGcGGGUGGUGG-CGGUga -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 9081 | 0.73 | 0.123078 |
Target: 5'- cGGGCcGcCGUCGCCgGCgACCGcCCGCa -3' miRNA: 3'- -CCCGaC-GUAGCGGgUGgUGGC-GGUGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 1171 | 0.67 | 0.343927 |
Target: 5'- cGGCUGCGcCuCCCACCACaguuuccaCCACUg -3' miRNA: 3'- cCCGACGUaGcGGGUGGUGgc------GGUGA- -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 14672 | 0.67 | 0.312776 |
Target: 5'- cGGGCgGCGUCGCCgauGCCggGCCgGCCGu- -3' miRNA: 3'- -CCCGaCGUAGCGGg--UGG--UGG-CGGUga -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 18546 | 0.68 | 0.298021 |
Target: 5'- uGGGCUGCucggggCGCUCGCCggguGCgCGCCcaGCg -3' miRNA: 3'- -CCCGACGua----GCGGGUGG----UG-GCGG--UGa -5' |
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26273 | 5' | -61.1 | NC_005345.2 | + | 16889 | 0.68 | 0.283811 |
Target: 5'- uGGCgGCGgaaggCGCCCgucgaggcACUGCUGCCGCUg -3' miRNA: 3'- cCCGaCGUa----GCGGG--------UGGUGGCGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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