miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 3' -63.5 NC_005345.2 + 429 0.67 0.267883
Target:  5'- aUGCgGcCGGuGUCccgguucuUCA-CCUCGCGGGCg -3'
miRNA:   3'- aGCGgC-GCC-CAG--------AGUgGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 497 0.67 0.261483
Target:  5'- gCGCCGgaaguugugcCGGGUCaggacgcCGCCCU-GUGGGCc -3'
miRNA:   3'- aGCGGC----------GCCCAGa------GUGGGAgCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 557 0.7 0.158071
Target:  5'- cCGgCGUGGGUcCUCGCCCgcCGCGaGCu -3'
miRNA:   3'- aGCgGCGCCCA-GAGUGGGa-GCGCcCG- -5'
26275 3' -63.5 NC_005345.2 + 1220 0.67 0.28716
Target:  5'- aCGCCGCgcgguacGGGUCccaUgGCUUUCcgGCGGGCu -3'
miRNA:   3'- aGCGGCG-------CCCAG---AgUGGGAG--CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1326 0.67 0.267883
Target:  5'- cCGCUGCGGGUC-CuCCaggGCGaGGCg -3'
miRNA:   3'- aGCGGCGCCCAGaGuGGgagCGC-CCG- -5'
26275 3' -63.5 NC_005345.2 + 1462 0.66 0.331228
Target:  5'- cUGCCGUGGGUUguucgUCGCUCUaggCGCcauGGGUc -3'
miRNA:   3'- aGCGGCGCCCAG-----AGUGGGA---GCG---CCCG- -5'
26275 3' -63.5 NC_005345.2 + 1580 0.66 0.308233
Target:  5'- cCGCCGUGGGggccgUCACgagcguuCCUUGCGGucGCg -3'
miRNA:   3'- aGCGGCGCCCag---AGUG-------GGAGCGCC--CG- -5'
26275 3' -63.5 NC_005345.2 + 1795 0.67 0.28376
Target:  5'- cUCGCCacaccgcaCGGGcaaugaucuUCUucacugcugcucaccCGCCUUCGCGGGCa -3'
miRNA:   3'- -AGCGGc-------GCCC---------AGA---------------GUGGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 2360 0.67 0.27441
Target:  5'- -gGCgGCGcagcccGGUCgcgaCCUCGCGGGCc -3'
miRNA:   3'- agCGgCGC------CCAGagugGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 3945 0.73 0.106422
Target:  5'- cUCGCCGCGGccggCAgCCUCuCGGGCg -3'
miRNA:   3'- -AGCGGCGCCcagaGUgGGAGcGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 3960 0.68 0.237121
Target:  5'- aCGUCGaggcgaccccCGGGUUcgUCACCCUCGCGuGUc -3'
miRNA:   3'- aGCGGC----------GCCCAG--AGUGGGAGCGCcCG- -5'
26275 3' -63.5 NC_005345.2 + 4347 0.75 0.072905
Target:  5'- -aGCCG-GGGUC-CugCCUCggGCGGGCg -3'
miRNA:   3'- agCGGCgCCCAGaGugGGAG--CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 4795 0.67 0.277056
Target:  5'- cUCGCCGCGGGuggggaaccgaaugcUCgggCACCgUgGCGGc- -3'
miRNA:   3'- -AGCGGCGCCC---------------AGa--GUGGgAgCGCCcg -5'
26275 3' -63.5 NC_005345.2 + 5189 0.66 0.308233
Target:  5'- cUCGCC-CGaGGUC-CGCCC-CGgcacggcCGGGCa -3'
miRNA:   3'- -AGCGGcGC-CCAGaGUGGGaGC-------GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 5285 0.71 0.142416
Target:  5'- cCGCCGCGGaGUCccggccgaCGCCCcgUCGacCGGGCa -3'
miRNA:   3'- aGCGGCGCC-CAGa-------GUGGG--AGC--GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 6381 0.66 0.311858
Target:  5'- gCGuuGCGGucccaugugaugugcGgaaUCGCUUUCGCGGGCc -3'
miRNA:   3'- aGCggCGCC---------------Cag-AGUGGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 8010 0.7 0.170815
Target:  5'- -gGCCGC-GGUUUCACgagCUCGaCGGGCu -3'
miRNA:   3'- agCGGCGcCCAGAGUGg--GAGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 8020 0.67 0.267883
Target:  5'- -aGCCGCcaGUCggaGCCCcguacCGCGGGCg -3'
miRNA:   3'- agCGGCGccCAGag-UGGGa----GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 8663 0.68 0.214152
Target:  5'- aUCGUCGCGGcGaUCUCGCCgaUCGCcucccacGGGUu -3'
miRNA:   3'- -AGCGGCGCC-C-AGAGUGGg-AGCG-------CCCG- -5'
26275 3' -63.5 NC_005345.2 + 8678 0.68 0.237121
Target:  5'- cUCGCCGCGGcGg-UgGCCgUgaCGUGGGCg -3'
miRNA:   3'- -AGCGGCGCC-CagAgUGGgA--GCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.