miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 3' -63.5 NC_005345.2 + 13682 0.77 0.052467
Target:  5'- aCGCCGuCGGGcagCUCGCCCUCGaauGcGGCg -3'
miRNA:   3'- aGCGGC-GCCCa--GAGUGGGAGCg--C-CCG- -5'
26275 3' -63.5 NC_005345.2 + 33879 0.68 0.231335
Target:  5'- gUCGaCGUGGGggaCGCCgCUCGCGcGGCc -3'
miRNA:   3'- -AGCgGCGCCCagaGUGG-GAGCGC-CCG- -5'
26275 3' -63.5 NC_005345.2 + 3960 0.68 0.237121
Target:  5'- aCGUCGaggcgaccccCGGGUUcgUCACCCUCGCGuGUc -3'
miRNA:   3'- aGCGGC----------GCCCAG--AGUGGGAGCGCcCG- -5'
26275 3' -63.5 NC_005345.2 + 1462 0.66 0.331228
Target:  5'- cUGCCGUGGGUUguucgUCGCUCUaggCGCcauGGGUc -3'
miRNA:   3'- aGCGGCGCCCAG-----AGUGGGA---GCG---CCCG- -5'
26275 3' -63.5 NC_005345.2 + 43674 0.73 0.10087
Target:  5'- cCGCCGcCGGGUggcugaucagcCUCGCCg-CGUGGGCc -3'
miRNA:   3'- aGCGGC-GCCCA-----------GAGUGGgaGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 25394 0.72 0.112261
Target:  5'- aUCGCCGCcGGcCUCGCCgUCGaggccgaggaaaUGGGCg -3'
miRNA:   3'- -AGCGGCGcCCaGAGUGGgAGC------------GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 30026 0.71 0.146192
Target:  5'- gUCGCCgaGCGGaUCggCGCCCacgCGUGGGCc -3'
miRNA:   3'- -AGCGG--CGCCcAGa-GUGGGa--GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 12510 0.71 0.154017
Target:  5'- gUCGCaguaCGCGGGugaUCUCGCgcagCUCGCGGaGCg -3'
miRNA:   3'- -AGCG----GCGCCC---AGAGUGg---GAGCGCC-CG- -5'
26275 3' -63.5 NC_005345.2 + 48910 0.7 0.170815
Target:  5'- aCGgCGgGGGUCUCugCCU-GUGGcGCc -3'
miRNA:   3'- aGCgGCgCCCAGAGugGGAgCGCC-CG- -5'
26275 3' -63.5 NC_005345.2 + 15976 0.68 0.225668
Target:  5'- gUCGCCGa-GGUCguccgUACCUcUGUGGGCg -3'
miRNA:   3'- -AGCGGCgcCCAGa----GUGGGaGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 43501 0.69 0.199081
Target:  5'- aUCGCCGCcaaGGUCgcggcgaACCCggcgcUCGCGGaGCg -3'
miRNA:   3'- -AGCGGCGc--CCAGag-----UGGG-----AGCGCC-CG- -5'
26275 3' -63.5 NC_005345.2 + 8010 0.7 0.170815
Target:  5'- -gGCCGC-GGUUUCACgagCUCGaCGGGCu -3'
miRNA:   3'- agCGGCGcCCAGAGUGg--GAGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 17302 0.76 0.056983
Target:  5'- uUCGCCGCaGGUgCgccgCACCCgcCGCGGGUg -3'
miRNA:   3'- -AGCGGCGcCCA-Ga---GUGGGa-GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 8951 0.69 0.206238
Target:  5'- -gGCUGCGGGUgCUCGggcucgaccugucgcUCCgUCGaCGGGCg -3'
miRNA:   3'- agCGGCGCCCA-GAGU---------------GGG-AGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 47986 0.76 0.063595
Target:  5'- gCGCCGCGcacgCUC-CCCUCGCGGcGCg -3'
miRNA:   3'- aGCGGCGCcca-GAGuGGGAGCGCC-CG- -5'
26275 3' -63.5 NC_005345.2 + 18974 0.7 0.168195
Target:  5'- cUCGCCGCauGGGUCgcCGCuggccggcgggacgaCCUCGaCGGGUg -3'
miRNA:   3'- -AGCGGCG--CCCAGa-GUG---------------GGAGC-GCCCG- -5'
26275 3' -63.5 NC_005345.2 + 38310 0.68 0.214689
Target:  5'- cUCGCCG-GcGGUCaCACCCUgGCGGu- -3'
miRNA:   3'- -AGCGGCgC-CCAGaGUGGGAgCGCCcg -5'
26275 3' -63.5 NC_005345.2 + 33699 0.68 0.237121
Target:  5'- gCGaaGCGGcUCgggGCCgUCGCGGGCg -3'
miRNA:   3'- aGCggCGCCcAGag-UGGgAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 38769 0.74 0.090575
Target:  5'- aCGCCGUGGGgcaccgaCGCCCUCGaaGGCu -3'
miRNA:   3'- aGCGGCGCCCaga----GUGGGAGCgcCCG- -5'
26275 3' -63.5 NC_005345.2 + 5285 0.71 0.142416
Target:  5'- cCGCCGCGGaGUCccggccgaCGCCCcgUCGacCGGGCa -3'
miRNA:   3'- aGCGGCGCC-CAGa-------GUGGG--AGC--GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.