miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26278 3' -57.1 NC_005345.2 + 32001 1.09 0.000732
Target:  5'- uCGACCUCGGGUUCGACCUCGACCUCGg -3'
miRNA:   3'- -GCUGGAGCCCAAGCUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 32037 0.96 0.006916
Target:  5'- uCGACCUCGGGUUCGACCUCGGgUUCGa -3'
miRNA:   3'- -GCUGGAGCCCAAGCUGGAGCUgGAGC- -5'
26278 3' -57.1 NC_005345.2 + 32073 0.91 0.014301
Target:  5'- uCGACCUCGGGcUCGGCCUCGGgCUCGg -3'
miRNA:   3'- -GCUGGAGCCCaAGCUGGAGCUgGAGC- -5'
26278 3' -57.1 NC_005345.2 + 41843 0.8 0.094285
Target:  5'- cCGACUcaUCGGGgaCGACCUCGGCgUCGu -3'
miRNA:   3'- -GCUGG--AGCCCaaGCUGGAGCUGgAGC- -5'
26278 3' -57.1 NC_005345.2 + 16467 0.78 0.117592
Target:  5'- aCGAa--CGGGgucaggUCGACCUCGGCCUCGa -3'
miRNA:   3'- -GCUggaGCCCa-----AGCUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 22494 0.78 0.131168
Target:  5'- uGAgC-CGGGUUCGcccaccgcACCUCGGCCUCGg -3'
miRNA:   3'- gCUgGaGCCCAAGC--------UGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 43694 0.77 0.142285
Target:  5'- -aGCCUCGccgcguGGgcCGGCCUCGACCUCGa -3'
miRNA:   3'- gcUGGAGC------CCaaGCUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 9962 0.76 0.167136
Target:  5'- gCGGCC-CGGGUUCGggcugggguccGCCUCGACCa-- -3'
miRNA:   3'- -GCUGGaGCCCAAGC-----------UGGAGCUGGagc -5'
26278 3' -57.1 NC_005345.2 + 17966 0.74 0.222901
Target:  5'- uCGGCCgccugcCGGGccgCGGCCUCGAUCUCc -3'
miRNA:   3'- -GCUGGa-----GCCCaa-GCUGGAGCUGGAGc -5'
26278 3' -57.1 NC_005345.2 + 22201 0.73 0.259549
Target:  5'- uCGACggggaCGGGaUCGucuGCCUCGACCUCGa -3'
miRNA:   3'- -GCUGga---GCCCaAGC---UGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 32098 0.73 0.286619
Target:  5'- ------nGGGUUCGACCUCGGgCUCGg -3'
miRNA:   3'- gcuggagCCCAAGCUGGAGCUgGAGC- -5'
26278 3' -57.1 NC_005345.2 + 24790 0.72 0.296606
Target:  5'- cCGACCUCGGcaagguggugcagccGggCGACCggaUCGugCUCGg -3'
miRNA:   3'- -GCUGGAGCC---------------CaaGCUGG---AGCugGAGC- -5'
26278 3' -57.1 NC_005345.2 + 46115 0.72 0.315865
Target:  5'- gCGACCcugUCGGGgUCGAagcggCGGCCUCGg -3'
miRNA:   3'- -GCUGG---AGCCCaAGCUgga--GCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 43356 0.72 0.32352
Target:  5'- uCGACCUCGGGgUCGGCCggguaCGGCacgcCGa -3'
miRNA:   3'- -GCUGGAGCCCaAGCUGGa----GCUGga--GC- -5'
26278 3' -57.1 NC_005345.2 + 38608 0.71 0.345683
Target:  5'- -cGCCUCGGacacggcgaucUCGACgUCGGCCUCGg -3'
miRNA:   3'- gcUGGAGCCca---------AGCUGgAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 18994 0.71 0.350572
Target:  5'- uGGCCggCGGGa-CGACCUCGAcggguggcgcgccgcCCUCGg -3'
miRNA:   3'- gCUGGa-GCCCaaGCUGGAGCU---------------GGAGC- -5'
26278 3' -57.1 NC_005345.2 + 19865 0.71 0.35551
Target:  5'- -uGCCUCGGG--CGACCUCGaACCgcgCGc -3'
miRNA:   3'- gcUGGAGCCCaaGCUGGAGC-UGGa--GC- -5'
26278 3' -57.1 NC_005345.2 + 30798 0.71 0.372319
Target:  5'- uGACCgacuGG-UCGACCUCGACC-CGg -3'
miRNA:   3'- gCUGGagc-CCaAGCUGGAGCUGGaGC- -5'
26278 3' -57.1 NC_005345.2 + 40980 0.71 0.372319
Target:  5'- uCGACCUCGGcgUCGGCggCGACUUCc -3'
miRNA:   3'- -GCUGGAGCCcaAGCUGgaGCUGGAGc -5'
26278 3' -57.1 NC_005345.2 + 8950 0.7 0.389662
Target:  5'- gGGCUgCGGGUgcUCGGgCUCGACCUg- -3'
miRNA:   3'- gCUGGaGCCCA--AGCUgGAGCUGGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.