miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26278 3' -57.1 NC_005345.2 + 604 0.67 0.552548
Target:  5'- uCGGCCgccacCGGGUgaccauggugcggaUCGcguCCUCGGCCUgCGg -3'
miRNA:   3'- -GCUGGa----GCCCA--------------AGCu--GGAGCUGGA-GC- -5'
26278 3' -57.1 NC_005345.2 + 4289 0.68 0.493809
Target:  5'- uCGGgCUCGGGcugcggUUCGACCcauccgaggUCGACCUgCGu -3'
miRNA:   3'- -GCUgGAGCCC------AAGCUGG---------AGCUGGA-GC- -5'
26278 3' -57.1 NC_005345.2 + 4735 0.69 0.477825
Target:  5'- -cGCgCUCGGGUUCaccgggcucgacucgGACCUCGAcggcacCCUCGc -3'
miRNA:   3'- gcUG-GAGCCCAAG---------------CUGGAGCU------GGAGC- -5'
26278 3' -57.1 NC_005345.2 + 4824 0.66 0.651878
Target:  5'- gCGAUUUCGGGUaCG-CCUCGAUgggCGa -3'
miRNA:   3'- -GCUGGAGCCCAaGCuGGAGCUGga-GC- -5'
26278 3' -57.1 NC_005345.2 + 5638 0.7 0.407525
Target:  5'- gCGAgCgcCGGGUUCG-CCgCGACCUUGg -3'
miRNA:   3'- -GCUgGa-GCCCAAGCuGGaGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 8008 0.66 0.641141
Target:  5'- gCGGCCgc-GGUuucacgagcUCGACgggCUCGACCUCGc -3'
miRNA:   3'- -GCUGGagcCCA---------AGCUG---GAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 8950 0.7 0.389662
Target:  5'- gGGCUgCGGGUgcUCGGgCUCGACCUg- -3'
miRNA:   3'- gCUGGaGCCCA--AGCUgGAGCUGGAgc -5'
26278 3' -57.1 NC_005345.2 + 9922 0.67 0.587518
Target:  5'- uGACCg-GGGcagUCGGCgUCGGCC-CGa -3'
miRNA:   3'- gCUGGagCCCa--AGCUGgAGCUGGaGC- -5'
26278 3' -57.1 NC_005345.2 + 9962 0.76 0.167136
Target:  5'- gCGGCC-CGGGUUCGggcugggguccGCCUCGACCa-- -3'
miRNA:   3'- -GCUGGaGCCCAAGC-----------UGGAGCUGGagc -5'
26278 3' -57.1 NC_005345.2 + 11384 0.7 0.389662
Target:  5'- gCGGCCgccugCGGGcgagcagcUCGACCUCGACgaCGc -3'
miRNA:   3'- -GCUGGa----GCCCa-------AGCUGGAGCUGgaGC- -5'
26278 3' -57.1 NC_005345.2 + 16467 0.78 0.117592
Target:  5'- aCGAa--CGGGgucaggUCGACCUCGGCCUCGa -3'
miRNA:   3'- -GCUggaGCCCa-----AGCUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 16796 0.68 0.514124
Target:  5'- uGACCUCGccaacCGA-CUCGACCUCGc -3'
miRNA:   3'- gCUGGAGCccaa-GCUgGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 17966 0.74 0.222901
Target:  5'- uCGGCCgccugcCGGGccgCGGCCUCGAUCUCc -3'
miRNA:   3'- -GCUGGa-----GCCCaa-GCUGGAGCUGGAGc -5'
26278 3' -57.1 NC_005345.2 + 18153 0.7 0.407525
Target:  5'- cCGGCgUCGGGUaCaGCCUCGG-CUCGg -3'
miRNA:   3'- -GCUGgAGCCCAaGcUGGAGCUgGAGC- -5'
26278 3' -57.1 NC_005345.2 + 18345 0.67 0.576868
Target:  5'- uCGGCC-CGGG-UCGAggUCGACCagUCGg -3'
miRNA:   3'- -GCUGGaGCCCaAGCUggAGCUGG--AGC- -5'
26278 3' -57.1 NC_005345.2 + 18400 0.68 0.534771
Target:  5'- uCGugCcCGGcGUcUCGACCUCGACgaCGu -3'
miRNA:   3'- -GCugGaGCC-CA-AGCUGGAGCUGgaGC- -5'
26278 3' -57.1 NC_005345.2 + 18994 0.71 0.350572
Target:  5'- uGGCCggCGGGa-CGACCUCGAcggguggcgcgccgcCCUCGg -3'
miRNA:   3'- gCUGGa-GCCCaaGCUGGAGCU---------------GGAGC- -5'
26278 3' -57.1 NC_005345.2 + 19000 0.69 0.444743
Target:  5'- uCGGCCcgagCGGGgcggCG-CCUCGACgUCGc -3'
miRNA:   3'- -GCUGGa---GCCCaa--GCuGGAGCUGgAGC- -5'
26278 3' -57.1 NC_005345.2 + 19865 0.71 0.35551
Target:  5'- -uGCCUCGGG--CGACCUCGaACCgcgCGc -3'
miRNA:   3'- gcUGGAGCCCaaGCUGGAGC-UGGa--GC- -5'
26278 3' -57.1 NC_005345.2 + 21022 0.66 0.641141
Target:  5'- cCGGCC-CGGGUgCGuuCCUCGGCacgCGc -3'
miRNA:   3'- -GCUGGaGCCCAaGCu-GGAGCUGga-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.