Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26279 | 3' | -56.2 | NC_005345.2 | + | 43499 | 0.66 | 0.699375 |
Target: 5'- cCGGgccCGCCGGgCGgugcCGAUCGGGucGGCGa -3' miRNA: 3'- -GCU---GCGGCUgGC----GCUAGUCCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 38198 | 0.66 | 0.656321 |
Target: 5'- gGGCGUagGGCgGCGG-CGGGAacGGACGg -3' miRNA: 3'- gCUGCGg-CUGgCGCUaGUCCU--UCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 193 | 0.66 | 0.671463 |
Target: 5'- aCGcAUGCCGcUCGCGAUucuguggcuguccagCGGGGAGGCu -3' miRNA: 3'- -GC-UGCGGCuGGCGCUA---------------GUCCUUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 41678 | 0.66 | 0.673622 |
Target: 5'- uCGGCGCCGaggucgaucgcuGCCGCGGUCAcGAuccgguccugcucGACGu -3' miRNA: 3'- -GCUGCGGC------------UGGCGCUAGUcCUu------------CUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 45846 | 0.66 | 0.699375 |
Target: 5'- gCGGCGCgGG-CGaCGAUCGuGggGGCGg -3' miRNA: 3'- -GCUGCGgCUgGC-GCUAGUcCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 3730 | 0.66 | 0.677933 |
Target: 5'- gCGACGUCGACgaCGCGGUC--GAAGAa- -3' miRNA: 3'- -GCUGCGGCUG--GCGCUAGucCUUCUgc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 11602 | 0.67 | 0.623765 |
Target: 5'- uGGCGUggggCGGCCGCuggCGGGAguGGGCGg -3' miRNA: 3'- gCUGCG----GCUGGCGcuaGUCCU--UCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 22801 | 0.67 | 0.623765 |
Target: 5'- cCGACGCCcacACCGCGGaCGGcGAcGGCa -3' miRNA: 3'- -GCUGCGGc--UGGCGCUaGUC-CUuCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 42470 | 0.67 | 0.602081 |
Target: 5'- uCGACGCCGagGCCGUcGUCGaGGAGAUc -3' miRNA: 3'- -GCUGCGGC--UGGCGcUAGUcCUUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 10785 | 0.67 | 0.591272 |
Target: 5'- aGACaGCCGcGCUGCGG-CAGGcGGACc -3' miRNA: 3'- gCUG-CGGC-UGGCGCUaGUCCuUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 44474 | 0.67 | 0.634623 |
Target: 5'- gGGCGUCGAgC-CGAgCAGcGAAGGCGa -3' miRNA: 3'- gCUGCGGCUgGcGCUaGUC-CUUCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 35000 | 0.67 | 0.634623 |
Target: 5'- uCGGCGCCGgggcGCUGCGG-CGGccacguGggGGCGg -3' miRNA: 3'- -GCUGCGGC----UGGCGCUaGUC------CuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 29990 | 0.67 | 0.623765 |
Target: 5'- uCGGCGUccuCGGCCGgGGUCcGGguGGCGc -3' miRNA: 3'- -GCUGCG---GCUGGCgCUAGuCCuuCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 39859 | 0.67 | 0.612915 |
Target: 5'- -aACGCCGGCCGCGAgguacgcCGcGGccGACa -3' miRNA: 3'- gcUGCGGCUGGCGCUa------GU-CCuuCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 44028 | 0.67 | 0.602081 |
Target: 5'- -cAUGCCGcACCGCcg-UAGGAGGGCa -3' miRNA: 3'- gcUGCGGC-UGGCGcuaGUCCUUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 22928 | 0.67 | 0.602081 |
Target: 5'- aGACGCCG-CCauGCGGUuCAGGAucccAGAUu -3' miRNA: 3'- gCUGCGGCuGG--CGCUA-GUCCU----UCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 8200 | 0.67 | 0.598835 |
Target: 5'- aGACGCCGccugcacgagaucgGCCGUGcuGUCcGGGuAGACGa -3' miRNA: 3'- gCUGCGGC--------------UGGCGC--UAG-UCCuUCUGC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 8744 | 0.67 | 0.580496 |
Target: 5'- gCGAgCGCgaCGACUGCaGcAUCGGGGAGGCu -3' miRNA: 3'- -GCU-GCG--GCUGGCG-C-UAGUCCUUCUGc -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 31140 | 0.67 | 0.591272 |
Target: 5'- cCGGCGuCCGACagGCGGUCGaggccucgacacGGGAGAuCGa -3' miRNA: 3'- -GCUGC-GGCUGg-CGCUAGU------------CCUUCU-GC- -5' |
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26279 | 3' | -56.2 | NC_005345.2 | + | 40986 | 0.67 | 0.634623 |
Target: 5'- uCGGCGUCGGCgGCGAcuUCcuGGuucAGGCGa -3' miRNA: 3'- -GCUGCGGCUGgCGCU--AGu-CCu--UCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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