miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26279 3' -56.2 NC_005345.2 + 45846 0.66 0.699375
Target:  5'- gCGGCGCgGG-CGaCGAUCGuGggGGCGg -3'
miRNA:   3'- -GCUGCGgCUgGC-GCUAGUcCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 15182 0.66 0.656321
Target:  5'- uCGGCGcCCGACUggaauccgcggGUGAUCAGGucGaACGc -3'
miRNA:   3'- -GCUGC-GGCUGG-----------CGCUAGUCCuuC-UGC- -5'
26279 3' -56.2 NC_005345.2 + 13779 0.66 0.645478
Target:  5'- -cGCGCCGAaCGCGggCuuGAGGACGc -3'
miRNA:   3'- gcUGCGGCUgGCGCuaGucCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8558 0.66 0.645478
Target:  5'- cCGugcuCGCCGGCUGCGAUCGuccauGcGGGCGu -3'
miRNA:   3'- -GCu---GCGGCUGGCGCUAGUc----CuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 6694 0.66 0.644393
Target:  5'- uCGGCGUCGauaucGCCGCGcgUGGGGAcgccgauGACGa -3'
miRNA:   3'- -GCUGCGGC-----UGGCGCuaGUCCUU-------CUGC- -5'
26279 3' -56.2 NC_005345.2 + 2587 0.66 0.642222
Target:  5'- cCGAgGCUGACgGCGA--GGGAuaccucaugcgcgcGGACGg -3'
miRNA:   3'- -GCUgCGGCUGgCGCUagUCCU--------------UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 21430 0.66 0.645478
Target:  5'- gCGAgGCCGGCCGCG-UCugc-GGACa -3'
miRNA:   3'- -GCUgCGGCUGGCGCuAGuccuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 32808 0.66 0.645478
Target:  5'- uCGGCGCguuCCGCGAggcacUCGGGAagcAGugGg -3'
miRNA:   3'- -GCUGCGgcuGGCGCU-----AGUCCU---UCugC- -5'
26279 3' -56.2 NC_005345.2 + 35015 0.66 0.645478
Target:  5'- gCGACGCUG-CCGUGuggcUguGGcAGACGa -3'
miRNA:   3'- -GCUGCGGCuGGCGCu---AguCCuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 38198 0.66 0.656321
Target:  5'- gGGCGUagGGCgGCGG-CGGGAacGGACGg -3'
miRNA:   3'- gCUGCGg-CUGgCGCUaGUCCU--UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 193 0.66 0.671463
Target:  5'- aCGcAUGCCGcUCGCGAUucuguggcuguccagCGGGGAGGCu -3'
miRNA:   3'- -GC-UGCGGCuGGCGCUA---------------GUCCUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 41678 0.66 0.673622
Target:  5'- uCGGCGCCGaggucgaucgcuGCCGCGGUCAcGAuccgguccugcucGACGu -3'
miRNA:   3'- -GCUGCGGC------------UGGCGCUAGUcCUu------------CUGC- -5'
26279 3' -56.2 NC_005345.2 + 43499 0.66 0.699375
Target:  5'- cCGGgccCGCCGGgCGgugcCGAUCGGGucGGCGa -3'
miRNA:   3'- -GCU---GCGGCUgGC----GCUAGUCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 34503 0.66 0.68868
Target:  5'- cCGGUGCCGAggaCGCGGUCgAGGcGGGCc -3'
miRNA:   3'- -GCUGCGGCUg--GCGCUAG-UCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 40530 0.66 0.68868
Target:  5'- aCGACugcucacccCCGACCgggGCGAUCGGGccGACc -3'
miRNA:   3'- -GCUGc--------GGCUGG---CGCUAGUCCuuCUGc -5'
26279 3' -56.2 NC_005345.2 + 9066 0.66 0.68868
Target:  5'- gCGGCGCCauugcugcCCGCGGUCGacGGu-GACGg -3'
miRNA:   3'- -GCUGCGGcu------GGCGCUAGU--CCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 17701 0.66 0.687608
Target:  5'- -cGCGCCGGCCucgGCGA-CGGGAcccgugaaccgacAGGCa -3'
miRNA:   3'- gcUGCGGCUGG---CGCUaGUCCU-------------UCUGc -5'
26279 3' -56.2 NC_005345.2 + 30897 0.66 0.677933
Target:  5'- aCGGCG-CGGCCgGCGAgcagcacCGGGAccaGGGCGa -3'
miRNA:   3'- -GCUGCgGCUGG-CGCUa------GUCCU---UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 15066 0.66 0.677933
Target:  5'- gGGCGCCGGCCugcagcgccugcGUGAUCAGGccuACc -3'
miRNA:   3'- gCUGCGGCUGG------------CGCUAGUCCuucUGc -5'
26279 3' -56.2 NC_005345.2 + 3730 0.66 0.677933
Target:  5'- gCGACGUCGACgaCGCGGUC--GAAGAa- -3'
miRNA:   3'- -GCUGCGGCUG--GCGCUAGucCUUCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.