miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26279 3' -56.2 NC_005345.2 + 35981 0.76 0.200258
Target:  5'- gGACcCCGGCCGC-AUguGGGAGACGg -3'
miRNA:   3'- gCUGcGGCUGGCGcUAguCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 12375 0.69 0.466264
Target:  5'- cCGACGCCucGCaGCGGagGGGAAGGCa -3'
miRNA:   3'- -GCUGCGGc-UGgCGCUagUCCUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 28393 0.69 0.496405
Target:  5'- -cGCGCCG-CCGCGGcggcagcggCAGGcAGGGCGg -3'
miRNA:   3'- gcUGCGGCuGGCGCUa--------GUCC-UUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 28315 0.66 0.699375
Target:  5'- gCGACGgCGA-CGaCGAcCAGGAcGACGa -3'
miRNA:   3'- -GCUGCgGCUgGC-GCUaGUCCUuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 2547 0.73 0.286668
Target:  5'- cCGGCGCCGGCCcCGAUCcAGcGcGAGGCGu -3'
miRNA:   3'- -GCUGCGGCUGGcGCUAG-UC-C-UUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8432 0.73 0.301171
Target:  5'- gGACGCCGAgCGguCGGUguGGAcGGACGg -3'
miRNA:   3'- gCUGCGGCUgGC--GCUAguCCU-UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 10842 0.72 0.323977
Target:  5'- cCGGCGCCGAgCUGCGGU-GGGcGGACu -3'
miRNA:   3'- -GCUGCGGCU-GGCGCUAgUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 29422 0.72 0.331859
Target:  5'- gCGACGCCGAUCaGCGAUCucGAAucGugGg -3'
miRNA:   3'- -GCUGCGGCUGG-CGCUAGucCUU--CugC- -5'
26279 3' -56.2 NC_005345.2 + 26345 0.71 0.382072
Target:  5'- cCGuCGCCGuCCGCGGUguGGgcGuCGg -3'
miRNA:   3'- -GCuGCGGCuGGCGCUAguCCuuCuGC- -5'
26279 3' -56.2 NC_005345.2 + 35141 0.69 0.466264
Target:  5'- aGGUGCUGGCgGCGAUCGGGGcauGGCu -3'
miRNA:   3'- gCUGCGGCUGgCGCUAGUCCUu--CUGc -5'
26279 3' -56.2 NC_005345.2 + 10050 0.7 0.437098
Target:  5'- --uCGCCGAggaCGCGAUCGGGuucGACGc -3'
miRNA:   3'- gcuGCGGCUg--GCGCUAGUCCuu-CUGC- -5'
26279 3' -56.2 NC_005345.2 + 33475 0.71 0.382072
Target:  5'- aGAUcgGCCGGCCGaCGGUgCAGGucGGCGc -3'
miRNA:   3'- gCUG--CGGCUGGC-GCUA-GUCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 31311 0.76 0.200258
Target:  5'- gGGCGCUGcugCGCGGUCuGGAGGGCGg -3'
miRNA:   3'- gCUGCGGCug-GCGCUAGuCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 30225 0.7 0.437098
Target:  5'- uCGACGCCGA-CGCGAgccGcGAGGACa -3'
miRNA:   3'- -GCUGCGGCUgGCGCUaguC-CUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 37944 0.74 0.252827
Target:  5'- uCGACGCCGACgGUgcccgagcgGAUCGGGAuccGGugGc -3'
miRNA:   3'- -GCUGCGGCUGgCG---------CUAGUCCU---UCugC- -5'
26279 3' -56.2 NC_005345.2 + 30709 0.72 0.348043
Target:  5'- gGugGCCG-CgGUGAUCGGcGAGGACc -3'
miRNA:   3'- gCugCGGCuGgCGCUAGUC-CUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 11200 0.7 0.446704
Target:  5'- uCGACGCCGGCCuGUGGcaCGGGcauGGGCa -3'
miRNA:   3'- -GCUGCGGCUGG-CGCUa-GUCCu--UCUGc -5'
26279 3' -56.2 NC_005345.2 + 36502 0.69 0.486257
Target:  5'- aCGGCgGCCGACCGCGcccCGGcGAAcuGGCGu -3'
miRNA:   3'- -GCUG-CGGCUGGCGCua-GUC-CUU--CUGC- -5'
26279 3' -56.2 NC_005345.2 + 23660 0.74 0.265953
Target:  5'- aCGGCGCCGACCagggucgcgGcCGGUCGGGcGGGCc -3'
miRNA:   3'- -GCUGCGGCUGG---------C-GCUAGUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 38876 0.72 0.316234
Target:  5'- uGuCGCCGGCCGCGAgu-GGAcGGCa -3'
miRNA:   3'- gCuGCGGCUGGCGCUaguCCUuCUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.