miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26279 3' -56.2 NC_005345.2 + 193 0.66 0.671463
Target:  5'- aCGcAUGCCGcUCGCGAUucuguggcuguccagCGGGGAGGCu -3'
miRNA:   3'- -GC-UGCGGCuGGCGCUA---------------GUCCUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 2547 0.73 0.286668
Target:  5'- cCGGCGCCGGCCcCGAUCcAGcGcGAGGCGu -3'
miRNA:   3'- -GCUGCGGCUGGcGCUAG-UC-C-UUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 2587 0.66 0.642222
Target:  5'- cCGAgGCUGACgGCGA--GGGAuaccucaugcgcgcGGACGg -3'
miRNA:   3'- -GCUgCGGCUGgCGCUagUCCU--------------UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 3730 0.66 0.677933
Target:  5'- gCGACGUCGACgaCGCGGUC--GAAGAa- -3'
miRNA:   3'- -GCUGCGGCUG--GCGCUAGucCUUCUgc -5'
26279 3' -56.2 NC_005345.2 + 3875 0.7 0.446704
Target:  5'- gGACGCCGAgugcCUGCaGcgCGGcGAGGGCGg -3'
miRNA:   3'- gCUGCGGCU----GGCG-CuaGUC-CUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 4388 0.67 0.612915
Target:  5'- aCGGCGCCgcauGAgCGCGAUCGacaaggcccGGAagcAGGCGc -3'
miRNA:   3'- -GCUGCGG----CUgGCGCUAGU---------CCU---UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 4691 0.73 0.286668
Target:  5'- uCGACGCCcGugCgGCGAaCAGGgcGGCGa -3'
miRNA:   3'- -GCUGCGG-CugG-CGCUaGUCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 6694 0.66 0.644393
Target:  5'- uCGGCGUCGauaucGCCGCGcgUGGGGAcgccgauGACGa -3'
miRNA:   3'- -GCUGCGGC-----UGGCGCuaGUCCUU-------CUGC- -5'
26279 3' -56.2 NC_005345.2 + 6823 0.66 0.68868
Target:  5'- gGACGCC-AUgGCGggCGGGAucGACa -3'
miRNA:   3'- gCUGCGGcUGgCGCuaGUCCUu-CUGc -5'
26279 3' -56.2 NC_005345.2 + 6861 0.69 0.496405
Target:  5'- gGACGCCcacGACgCGcCGGUCgAGGuGGACGg -3'
miRNA:   3'- gCUGCGG---CUG-GC-GCUAG-UCCuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8200 0.67 0.598835
Target:  5'- aGACGCCGccugcacgagaucgGCCGUGcuGUCcGGGuAGACGa -3'
miRNA:   3'- gCUGCGGC--------------UGGCGC--UAG-UCCuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8432 0.73 0.301171
Target:  5'- gGACGCCGAgCGguCGGUguGGAcGGACGg -3'
miRNA:   3'- gCUGCGGCUgGC--GCUAguCCU-UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8558 0.66 0.645478
Target:  5'- cCGugcuCGCCGGCUGCGAUCGuccauGcGGGCGu -3'
miRNA:   3'- -GCu---GCGGCUGGCGCUAGUc----CuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8729 0.67 0.591272
Target:  5'- cCGuCGCCGGCgGCGAUCcGuacGGACGc -3'
miRNA:   3'- -GCuGCGGCUGgCGCUAGuCcu-UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8744 0.67 0.580496
Target:  5'- gCGAgCGCgaCGACUGCaGcAUCGGGGAGGCu -3'
miRNA:   3'- -GCU-GCG--GCUGGCG-C-UAGUCCUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 9066 0.66 0.68868
Target:  5'- gCGGCGCCauugcugcCCGCGGUCGacGGu-GACGg -3'
miRNA:   3'- -GCUGCGGcu------GGCGCUAGU--CCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 10050 0.7 0.437098
Target:  5'- --uCGCCGAggaCGCGAUCGGGuucGACGc -3'
miRNA:   3'- gcuGCGGCUg--GCGCUAGUCCuu-CUGC- -5'
26279 3' -56.2 NC_005345.2 + 10785 0.67 0.591272
Target:  5'- aGACaGCCGcGCUGCGG-CAGGcGGACc -3'
miRNA:   3'- gCUG-CGGC-UGGCGCUaGUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 10842 0.72 0.323977
Target:  5'- cCGGCGCCGAgCUGCGGU-GGGcGGACu -3'
miRNA:   3'- -GCUGCGGCU-GGCGCUAgUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 11200 0.7 0.446704
Target:  5'- uCGACGCCGGCCuGUGGcaCGGGcauGGGCa -3'
miRNA:   3'- -GCUGCGGCUGG-CGCUa-GUCCu--UCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.