miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26279 3' -56.2 NC_005345.2 + 30451 1.1 0.000772
Target:  5'- aCGACGCCGACCGCGAUCAGGAAGACGa -3'
miRNA:   3'- -GCUGCGGCUGGCGCUAGUCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 30838 0.8 0.101334
Target:  5'- uGACGCCGACCaguGCGA-CGGcGAGGACGa -3'
miRNA:   3'- gCUGCGGCUGG---CGCUaGUC-CUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 35981 0.76 0.200258
Target:  5'- gGACcCCGGCCGC-AUguGGGAGACGg -3'
miRNA:   3'- gCUGcGGCUGGCGcUAguCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 31311 0.76 0.200258
Target:  5'- gGGCGCUGcugCGCGGUCuGGAGGGCGg -3'
miRNA:   3'- gCUGCGGCug-GCGCUAGuCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 32799 0.75 0.216634
Target:  5'- gCGGCGCCGGCCGCGAUgccGccGACGa -3'
miRNA:   3'- -GCUGCGGCUGGCGCUAgucCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 26921 0.75 0.228179
Target:  5'- uCGACGUCGAgCGCauggucgaGGUCAGGcAGACGa -3'
miRNA:   3'- -GCUGCGGCUgGCG--------CUAGUCCuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 27190 0.74 0.246467
Target:  5'- uCGGCGCgGGCCGUGAUCggcagcGGGucGGCGc -3'
miRNA:   3'- -GCUGCGgCUGGCGCUAG------UCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 16046 0.74 0.252827
Target:  5'- uGuCGCCGAgCGCGAUCcGGGuccGGGCGg -3'
miRNA:   3'- gCuGCGGCUgGCGCUAGuCCU---UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 37944 0.74 0.252827
Target:  5'- uCGACGCCGACgGUgcccgagcgGAUCGGGAuccGGugGc -3'
miRNA:   3'- -GCUGCGGCUGgCG---------CUAGUCCU---UCugC- -5'
26279 3' -56.2 NC_005345.2 + 23660 0.74 0.265953
Target:  5'- aCGGCGCCGACCagggucgcgGcCGGUCGGGcGGGCc -3'
miRNA:   3'- -GCUGCGGCUGG---------C-GCUAGUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 32963 0.74 0.271356
Target:  5'- gGACGCCGGCCGCGuccgcguaguccUCGGcGcAGGCGg -3'
miRNA:   3'- gCUGCGGCUGGCGCu-----------AGUC-CuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 2547 0.73 0.286668
Target:  5'- cCGGCGCCGGCCcCGAUCcAGcGcGAGGCGu -3'
miRNA:   3'- -GCUGCGGCUGGcGCUAG-UC-C-UUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 4691 0.73 0.286668
Target:  5'- uCGACGCCcGugCgGCGAaCAGGgcGGCGa -3'
miRNA:   3'- -GCUGCGG-CugG-CGCUaGUCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8432 0.73 0.301171
Target:  5'- gGACGCCGAgCGguCGGUguGGAcGGACGg -3'
miRNA:   3'- gCUGCGGCUgGC--GCUAguCCU-UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 40838 0.73 0.308633
Target:  5'- uCGGCGaCCaguuccGCCGCGAUCacgugcAGGAGGGCGg -3'
miRNA:   3'- -GCUGC-GGc-----UGGCGCUAG------UCCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 38876 0.72 0.316234
Target:  5'- uGuCGCCGGCCGCGAgu-GGAcGGCa -3'
miRNA:   3'- gCuGCGGCUGGCGCUaguCCUuCUGc -5'
26279 3' -56.2 NC_005345.2 + 10842 0.72 0.323977
Target:  5'- cCGGCGCCGAgCUGCGGU-GGGcGGACu -3'
miRNA:   3'- -GCUGCGGCU-GGCGCUAgUCCuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 29422 0.72 0.331859
Target:  5'- gCGACGCCGAUCaGCGAUCucGAAucGugGg -3'
miRNA:   3'- -GCUGCGGCUGG-CGCUAGucCUU--CugC- -5'
26279 3' -56.2 NC_005345.2 + 46224 0.72 0.348043
Target:  5'- uGA-GCUGAgCCGUGGUCAGGAGcGGCGc -3'
miRNA:   3'- gCUgCGGCU-GGCGCUAGUCCUU-CUGC- -5'
26279 3' -56.2 NC_005345.2 + 30709 0.72 0.348043
Target:  5'- gGugGCCG-CgGUGAUCGGcGAGGACc -3'
miRNA:   3'- gCugCGGCuGgCGCUAGUC-CUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.