miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26280 3' -60.1 NC_005345.2 + 30288 1.09 0.000262
Target:  5'- gCUGUCGAUCGCGGCCCGCACCUGCUCg -3'
miRNA:   3'- -GACAGCUAGCGCCGGGCGUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 39423 0.79 0.050083
Target:  5'- -cGgcgCGGUCGCGGCCCGCGCggcgcgGCUCa -3'
miRNA:   3'- gaCa--GCUAGCGCCGGGCGUGga----CGAG- -5'
26280 3' -60.1 NC_005345.2 + 21959 0.79 0.050083
Target:  5'- gCUGcCGAUCaCGGCCCGCGCCgaugcccgguacUGCUCg -3'
miRNA:   3'- -GACaGCUAGcGCCGGGCGUGG------------ACGAG- -5'
26280 3' -60.1 NC_005345.2 + 37856 0.79 0.054561
Target:  5'- -gGUCGGUCGCGGCCgGCGag-GCUCa -3'
miRNA:   3'- gaCAGCUAGCGCCGGgCGUggaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 40079 0.79 0.057761
Target:  5'- -cGUCGAcCGCgggcagcaauGGCgCCGCGCCUGCUCg -3'
miRNA:   3'- gaCAGCUaGCG----------CCG-GGCGUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 44759 0.76 0.085802
Target:  5'- uUGUCGAUCgcgcucauGCGGCgccguccuuCCGCugCUGCUCg -3'
miRNA:   3'- gACAGCUAG--------CGCCG---------GGCGugGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 39263 0.75 0.113334
Target:  5'- -cGcCGAguuCGGCCCGCugCUGCUCg -3'
miRNA:   3'- gaCaGCUagcGCCGGGCGugGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 12872 0.74 0.126512
Target:  5'- uUGUUGAUCGCGGCCgGguugcCGCC-GCUCu -3'
miRNA:   3'- gACAGCUAGCGCCGGgC-----GUGGaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 792 0.73 0.153029
Target:  5'- aUGcCGAcCG-GGCCCGCuuacACCUGCUCg -3'
miRNA:   3'- gACaGCUaGCgCCGGGCG----UGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 41688 0.73 0.157206
Target:  5'- -gGUCGAUCGCuGCCgcggucacgaucCGguCCUGCUCg -3'
miRNA:   3'- gaCAGCUAGCGcCGG------------GCguGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 16348 0.72 0.184492
Target:  5'- -cGUCGGcggcaUCGCGGCCgGCGCC-GCg- -3'
miRNA:   3'- gaCAGCU-----AGCGCCGGgCGUGGaCGag -5'
26280 3' -60.1 NC_005345.2 + 26787 0.71 0.215318
Target:  5'- ----gGAUCGUGGCCgGCGCCgcgucgcaggcgcUGCUCg -3'
miRNA:   3'- gacagCUAGCGCCGGgCGUGG-------------ACGAG- -5'
26280 3' -60.1 NC_005345.2 + 35489 0.7 0.232626
Target:  5'- -cGUCGAggGCGGCgCGCugCUcgucggcGCUCa -3'
miRNA:   3'- gaCAGCUagCGCCGgGCGugGA-------CGAG- -5'
26280 3' -60.1 NC_005345.2 + 41049 0.7 0.237435
Target:  5'- -gGUCGGUCuuGCGgaagugcucuugcaGCCCGgcCGCCUGCUCg -3'
miRNA:   3'- gaCAGCUAG--CGC--------------CGGGC--GUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 18877 0.7 0.23926
Target:  5'- gCUGcUCGGgcUCGaCGaGCCCG-GCCUGCUCg -3'
miRNA:   3'- -GAC-AGCU--AGC-GC-CGGGCgUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 25743 0.69 0.264722
Target:  5'- --cUCGAcgaGCuGCCCGC-CCUGCUCa -3'
miRNA:   3'- gacAGCUag-CGcCGGGCGuGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 6132 0.69 0.271421
Target:  5'- gCUGUUGAaccUGCGGaCCCggucGCACCgGCUCa -3'
miRNA:   3'- -GACAGCUa--GCGCC-GGG----CGUGGaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 18209 0.69 0.278256
Target:  5'- ---cCGGUCGCGGCCgUGCACCgugaGCg- -3'
miRNA:   3'- gacaGCUAGCGCCGG-GCGUGGa---CGag -5'
26280 3' -60.1 NC_005345.2 + 15616 0.69 0.285228
Target:  5'- -cGUCGucagcaugcCGCGGCUCGCcGCCUGCcCg -3'
miRNA:   3'- gaCAGCua-------GCGCCGGGCG-UGGACGaG- -5'
26280 3' -60.1 NC_005345.2 + 15053 0.68 0.298852
Target:  5'- aUGUCGccGUCGCgggcgccGGCCUGCagcGCCUGCg- -3'
miRNA:   3'- gACAGC--UAGCG-------CCGGGCG---UGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.