miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26280 3' -60.1 NC_005345.2 + 792 0.73 0.153029
Target:  5'- aUGcCGAcCG-GGCCCGCuuacACCUGCUCg -3'
miRNA:   3'- gACaGCUaGCgCCGGGCG----UGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 1343 0.67 0.388395
Target:  5'- ----gGGUCGCGGUaaCGCGCCUGC-Ca -3'
miRNA:   3'- gacagCUAGCGCCGg-GCGUGGACGaG- -5'
26280 3' -60.1 NC_005345.2 + 1630 0.67 0.387513
Target:  5'- -gGUCGGUCGCGGCgaacucgCgGUACCgagugugGUUCg -3'
miRNA:   3'- gaCAGCUAGCGCCG-------GgCGUGGa------CGAG- -5'
26280 3' -60.1 NC_005345.2 + 2795 0.68 0.314491
Target:  5'- uUGUCGG-CGcCGGCgUGCgcucgaucGCCUGCUCc -3'
miRNA:   3'- gACAGCUaGC-GCCGgGCG--------UGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 3308 0.66 0.406296
Target:  5'- ---aCGAUCGUcGCCCGCGCCgccGC-Cg -3'
miRNA:   3'- gacaGCUAGCGcCGGGCGUGGa--CGaG- -5'
26280 3' -60.1 NC_005345.2 + 3935 0.68 0.337891
Target:  5'- -cGUCGAggugcucgcCGCGGCCgGCAgCCU-CUCg -3'
miRNA:   3'- gaCAGCUa--------GCGCCGGgCGU-GGAcGAG- -5'
26280 3' -60.1 NC_005345.2 + 4899 0.66 0.412682
Target:  5'- -aGUCGAUgcucgccgagcugcUGCGGCagCCGCACgUGCg- -3'
miRNA:   3'- gaCAGCUA--------------GCGCCG--GGCGUGgACGag -5'
26280 3' -60.1 NC_005345.2 + 6132 0.69 0.271421
Target:  5'- gCUGUUGAaccUGCGGaCCCggucGCACCgGCUCa -3'
miRNA:   3'- -GACAGCUa--GCGCC-GGG----CGUGGaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 8187 0.67 0.362533
Target:  5'- -gGUCGAUCGCGaaagacgccGCCUGCACgaGaUCg -3'
miRNA:   3'- gaCAGCUAGCGC---------CGGGCGUGgaCgAG- -5'
26280 3' -60.1 NC_005345.2 + 8977 0.67 0.354182
Target:  5'- --cUCGAUCGCaGCUgCGCGCCguacacGCUCa -3'
miRNA:   3'- gacAGCUAGCGcCGG-GCGUGGa-----CGAG- -5'
26280 3' -60.1 NC_005345.2 + 10623 0.66 0.415439
Target:  5'- uCUGUCGGUaCG-GGCCCaCcCCgggGCUCg -3'
miRNA:   3'- -GACAGCUA-GCgCCGGGcGuGGa--CGAG- -5'
26280 3' -60.1 NC_005345.2 + 12872 0.74 0.126512
Target:  5'- uUGUUGAUCGCGGCCgGguugcCGCC-GCUCu -3'
miRNA:   3'- gACAGCUAGCGCCGGgC-----GUGGaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 14976 0.68 0.329953
Target:  5'- -aGUCGGUCGgGGCCCcGgGCCacucCUCg -3'
miRNA:   3'- gaCAGCUAGCgCCGGG-CgUGGac--GAG- -5'
26280 3' -60.1 NC_005345.2 + 15053 0.68 0.298852
Target:  5'- aUGUCGccGUCGCgggcgccGGCCUGCagcGCCUGCg- -3'
miRNA:   3'- gACAGC--UAGCG-------CCGGGCG---UGGACGag -5'
26280 3' -60.1 NC_005345.2 + 15616 0.69 0.285228
Target:  5'- -cGUCGucagcaugcCGCGGCUCGCcGCCUGCcCg -3'
miRNA:   3'- gaCAGCua-------GCGCCGGGCG-UGGACGaG- -5'
26280 3' -60.1 NC_005345.2 + 16241 0.66 0.424706
Target:  5'- cCUGaUCGA-C-CGGCCCGCagcgcccccaGCCUGCg- -3'
miRNA:   3'- -GAC-AGCUaGcGCCGGGCG----------UGGACGag -5'
26280 3' -60.1 NC_005345.2 + 16348 0.72 0.184492
Target:  5'- -cGUCGGcggcaUCGCGGCCgGCGCC-GCg- -3'
miRNA:   3'- gaCAGCU-----AGCGCCGGgCGUGGaCGag -5'
26280 3' -60.1 NC_005345.2 + 17452 0.67 0.371019
Target:  5'- aUGUCGAgCGUgaacgcccaacGGgCUGCGCCUGuCUCg -3'
miRNA:   3'- gACAGCUaGCG-----------CCgGGCGUGGAC-GAG- -5'
26280 3' -60.1 NC_005345.2 + 17547 0.68 0.329953
Target:  5'- aUG-CGAUcCGCGGgCCGCGCCgaGCa- -3'
miRNA:   3'- gACaGCUA-GCGCCgGGCGUGGa-CGag -5'
26280 3' -60.1 NC_005345.2 + 17633 0.66 0.434096
Target:  5'- -cGUCGAgaCGCGGCCgGUcggucacgACCgUGUUCg -3'
miRNA:   3'- gaCAGCUa-GCGCCGGgCG--------UGG-ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.