miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 3' -64.4 NC_005345.2 + 158 0.68 0.16524
Target:  5'- -aCCgAGCggGCCGGCG-UGCUCcCCACa -3'
miRNA:   3'- uaGGgUCG--CGGCCGCgACGAGcGGUG- -5'
26281 3' -64.4 NC_005345.2 + 773 0.67 0.193378
Target:  5'- cUCCCAGCGCa-GCGCcgucGCcUCGCCcCa -3'
miRNA:   3'- uAGGGUCGCGgcCGCGa---CG-AGCGGuG- -5'
26281 3' -64.4 NC_005345.2 + 905 0.66 0.231423
Target:  5'- -gUCCGGaugcuuCGCCGGCGC--CUCGCCAa -3'
miRNA:   3'- uaGGGUC------GCGGCCGCGacGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 2030 0.71 0.104498
Target:  5'- -cUCCGGgGCCGGC-CUGCa-GCCACa -3'
miRNA:   3'- uaGGGUCgCGGCCGcGACGagCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 2030 0.66 0.231423
Target:  5'- cGUCCUcgucgAGCGggcCCGGCGCggcccgGCggGCCGCg -3'
miRNA:   3'- -UAGGG-----UCGC---GGCCGCGa-----CGagCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 2749 0.66 0.243397
Target:  5'- gGUCgacaAGUGCCgccuucggacGGCgugGCUGCUCGCCGCc -3'
miRNA:   3'- -UAGgg--UCGCGG----------CCG---CGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 2795 0.71 0.093359
Target:  5'- uUgUCGGCGCCGGCGUgcgcucgaucgccUGCUccagCGCCGCg -3'
miRNA:   3'- uAgGGUCGCGGCCGCG-------------ACGA----GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 3025 0.66 0.231423
Target:  5'- -gCCgGGCGgCGGCaGCaUGCUCGCUu- -3'
miRNA:   3'- uaGGgUCGCgGCCG-CG-ACGAGCGGug -5'
26281 3' -64.4 NC_005345.2 + 3865 0.67 0.198457
Target:  5'- --aUCGGCGUCGGCgucccugcGCUGCUCuCCGCc -3'
miRNA:   3'- uagGGUCGCGGCCG--------CGACGAGcGGUG- -5'
26281 3' -64.4 NC_005345.2 + 3871 0.67 0.198457
Target:  5'- -aCCCGGaCGCCGaGUGcCUGCagCGCgGCg -3'
miRNA:   3'- uaGGGUC-GCGGC-CGC-GACGa-GCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 3917 0.66 0.237347
Target:  5'- cGUCguaCAG-GUCGGUGUcgucgaggUGCUCGCCGCg -3'
miRNA:   3'- -UAGg--GUCgCGGCCGCG--------ACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 4116 0.67 0.203653
Target:  5'- -cCCCgAGCgGuuGGCguucgagcgGCUGCUCGCgGCg -3'
miRNA:   3'- uaGGG-UCG-CggCCG---------CGACGAGCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 4534 0.77 0.03503
Target:  5'- --gUCAGUaGCCGGCGCUGC-CGCCGCu -3'
miRNA:   3'- uagGGUCG-CGGCCGCGACGaGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 4884 0.71 0.104498
Target:  5'- --aCCGGCGCCGcuGCGagucgaUGCUCGCCGa -3'
miRNA:   3'- uagGGUCGCGGC--CGCg-----ACGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 5204 0.69 0.144659
Target:  5'- -cCCCGGCacgGCCGG-GCaGCUCGCgGCc -3'
miRNA:   3'- uaGGGUCG---CGGCCgCGaCGAGCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 5229 0.67 0.188413
Target:  5'- --nCCGGCcugaucGCCGacGCGCUGCgCGCCGCc -3'
miRNA:   3'- uagGGUCG------CGGC--CGCGACGaGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 5669 0.69 0.148579
Target:  5'- -gCCCGGaccgaGCCGaccGCGCUGCgccgcgaacUCGCCGCc -3'
miRNA:   3'- uaGGGUCg----CGGC---CGCGACG---------AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 6941 0.68 0.178819
Target:  5'- uUCCCggucgucaugguGGUGCCGGCGaucGCUuCGCUGCg -3'
miRNA:   3'- uAGGG------------UCGCGGCCGCga-CGA-GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 6981 0.66 0.236749
Target:  5'- cUUCCAGCuGCUGGCcgggcgccgacagGCaGCgUCGCCACc -3'
miRNA:   3'- uAGGGUCG-CGGCCG-------------CGaCG-AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 7685 0.68 0.171007
Target:  5'- -cCCCAGCgcagcccGCCGGUaccgaagguggugcuGCUGCcCGCUACg -3'
miRNA:   3'- uaGGGUCG-------CGGCCG---------------CGACGaGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.