miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 3' -64.4 NC_005345.2 + 26795 0.86 0.006816
Target:  5'- --gCCGGCGCCgcgucgcaGGCGCUGCUCGCCGCa -3'
miRNA:   3'- uagGGUCGCGG--------CCGCGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 29219 0.67 0.188413
Target:  5'- uGUCCC-GCGaugaGGCGCUGCcguucaUCGcCCGCg -3'
miRNA:   3'- -UAGGGuCGCgg--CCGCGACG------AGC-GGUG- -5'
26281 3' -64.4 NC_005345.2 + 18522 0.67 0.192876
Target:  5'- cGUCCuCGGCGCCaugugcaccggugGGCuGCUcggggcGCUCGCCGg -3'
miRNA:   3'- -UAGG-GUCGCGG-------------CCG-CGA------CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 2749 0.66 0.243397
Target:  5'- gGUCgacaAGUGCCgccuucggacGGCgugGCUGCUCGCCGCc -3'
miRNA:   3'- -UAGgg--UCGCGG----------CCG---CGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 4884 0.71 0.104498
Target:  5'- --aCCGGCGCCGcuGCGagucgaUGCUCGCCGa -3'
miRNA:   3'- uagGGUCGCGGC--CGCg-----ACGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 25583 0.7 0.126445
Target:  5'- -cCCgCAGCuGCCGGUGCUGCcgaagaaCGCCGa -3'
miRNA:   3'- uaGG-GUCG-CGGCCGCGACGa------GCGGUg -5'
26281 3' -64.4 NC_005345.2 + 5204 0.69 0.144659
Target:  5'- -cCCCGGCacgGCCGG-GCaGCUCGCgGCc -3'
miRNA:   3'- uaGGGUCG---CGGCCgCGaCGAGCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 33284 0.69 0.144659
Target:  5'- gAUCacaAGCGCCGa-GCUGCUCGCCcACc -3'
miRNA:   3'- -UAGgg-UCGCGGCcgCGACGAGCGG-UG- -5'
26281 3' -64.4 NC_005345.2 + 43523 0.68 0.152595
Target:  5'- -aCCCGGCGCUcGCGgaGCggaUCGCCGa -3'
miRNA:   3'- uaGGGUCGCGGcCGCgaCG---AGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 28161 0.68 0.178819
Target:  5'- -gCCCGGU--CGGCGUUcCUCGCCGCg -3'
miRNA:   3'- uaGGGUCGcgGCCGCGAcGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 29757 0.68 0.174186
Target:  5'- -gCUCGGCG-CGaCGCUGCUCGgCACg -3'
miRNA:   3'- uaGGGUCGCgGCcGCGACGAGCgGUG- -5'
26281 3' -64.4 NC_005345.2 + 41354 0.69 0.148579
Target:  5'- -gUCCGGCGgCGGCGCagcGCUCGgCAa -3'
miRNA:   3'- uaGGGUCGCgGCCGCGa--CGAGCgGUg -5'
26281 3' -64.4 NC_005345.2 + 8655 0.78 0.027885
Target:  5'- cUCCCuaccuCGCCGuGCuGCUGCUCGCCGCg -3'
miRNA:   3'- uAGGGuc---GCGGC-CG-CGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 6941 0.68 0.178819
Target:  5'- uUCCCggucgucaugguGGUGCCGGCGaucGCUuCGCUGCg -3'
miRNA:   3'- uAGGG------------UCGCGGCCGCga-CGA-GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 18243 0.77 0.033091
Target:  5'- -cCCUGGUcCCGGUGCUGCUCGCCGg -3'
miRNA:   3'- uaGGGUCGcGGCCGCGACGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 5669 0.69 0.148579
Target:  5'- -gCCCGGaccgaGCCGaccGCGCUGCgccgcgaacUCGCCGCc -3'
miRNA:   3'- uaGGGUCg----CGGC---CGCGACG---------AGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 8881 0.68 0.178819
Target:  5'- cUCuCCGGacucaugccCGCCGGCGCcccguccccGCUCGCCAg -3'
miRNA:   3'- uAG-GGUC---------GCGGCCGCGa--------CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 5229 0.67 0.188413
Target:  5'- --nCCGGCcugaucGCCGacGCGCUGCgCGCCGCc -3'
miRNA:   3'- uagGGUCG------CGGC--CGCGACGaGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 41307 0.76 0.039248
Target:  5'- gGUgCCGGCGCCGGCgGCUGgaCGCCcuACa -3'
miRNA:   3'- -UAgGGUCGCGGCCG-CGACgaGCGG--UG- -5'
26281 3' -64.4 NC_005345.2 + 45498 0.69 0.144273
Target:  5'- gAUCCCGGCcgcugccGCCGG-GCUGCggaCGgCACa -3'
miRNA:   3'- -UAGGGUCG-------CGGCCgCGACGa--GCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.