miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 5' -56.3 NC_005345.2 + 29968 0.66 0.645689
Target:  5'- -cGCGUacGugCACGUCGACGGG-Ca-- -3'
miRNA:   3'- auCGCG--CugGUGCAGCUGCUCaGaca -5'
26281 5' -56.3 NC_005345.2 + 45410 0.66 0.645689
Target:  5'- -cGCGCGAguucuucgaCCGCGUCGuCGAcGUCg-- -3'
miRNA:   3'- auCGCGCU---------GGUGCAGCuGCU-CAGaca -5'
26281 5' -56.3 NC_005345.2 + 13038 0.66 0.634658
Target:  5'- gAGCGacuuGGCCGCGUCGAgGAccuuGUCUu- -3'
miRNA:   3'- aUCGCg---CUGGUGCAGCUgCU----CAGAca -5'
26281 5' -56.3 NC_005345.2 + 37056 0.66 0.623623
Target:  5'- cGGCcgGCGGCgACGUCGuCGA-UCUGUc -3'
miRNA:   3'- aUCG--CGCUGgUGCAGCuGCUcAGACA- -5'
26281 5' -56.3 NC_005345.2 + 6638 0.66 0.623623
Target:  5'- cGGUGCGACgGCGUCacCGAGcagCUGa -3'
miRNA:   3'- aUCGCGCUGgUGCAGcuGCUCa--GACa -5'
26281 5' -56.3 NC_005345.2 + 19801 0.66 0.612597
Target:  5'- --aUGCGGCCgaaGUCGACG-GUCUGc -3'
miRNA:   3'- aucGCGCUGGug-CAGCUGCuCAGACa -5'
26281 5' -56.3 NC_005345.2 + 18748 0.66 0.612597
Target:  5'- gAGCGCGGaCGCGUCGuCGAGg---- -3'
miRNA:   3'- aUCGCGCUgGUGCAGCuGCUCagaca -5'
26281 5' -56.3 NC_005345.2 + 11179 0.66 0.590604
Target:  5'- cGGCGCagguccgcaGCCugGUCGACGccGGcCUGUg -3'
miRNA:   3'- aUCGCGc--------UGGugCAGCUGC--UCaGACA- -5'
26281 5' -56.3 NC_005345.2 + 14768 0.66 0.590604
Target:  5'- cAGCGCggaGACCGcCGaCGACGGGUCc-- -3'
miRNA:   3'- aUCGCG---CUGGU-GCaGCUGCUCAGaca -5'
26281 5' -56.3 NC_005345.2 + 36873 0.66 0.590604
Target:  5'- gAGCG-GACCAgGUCGGCGuacGGUCcGa -3'
miRNA:   3'- aUCGCgCUGGUgCAGCUGC---UCAGaCa -5'
26281 5' -56.3 NC_005345.2 + 3068 0.67 0.557899
Target:  5'- gUAGCG-GAUCGUGUCGGCGAGgacaCUGg -3'
miRNA:   3'- -AUCGCgCUGGUGCAGCUGCUCa---GACa -5'
26281 5' -56.3 NC_005345.2 + 37730 0.67 0.557899
Target:  5'- cGGCGCGGCgccggCugGUCGGCGucGUCgagGUc -3'
miRNA:   3'- aUCGCGCUG-----GugCAGCUGCu-CAGa--CA- -5'
26281 5' -56.3 NC_005345.2 + 43913 0.67 0.557899
Target:  5'- cGGCGCGcAgCGCGUCGGCGA-UCa-- -3'
miRNA:   3'- aUCGCGC-UgGUGCAGCUGCUcAGaca -5'
26281 5' -56.3 NC_005345.2 + 10845 0.67 0.556816
Target:  5'- gGGUGUGACCGCcggcgagguaguaGUCGACGGGccaCUGc -3'
miRNA:   3'- aUCGCGCUGGUG-------------CAGCUGCUCa--GACa -5'
26281 5' -56.3 NC_005345.2 + 14315 0.67 0.547105
Target:  5'- gAGUucuGCGAgCACGUCGGCGAGgggCa-- -3'
miRNA:   3'- aUCG---CGCUgGUGCAGCUGCUCa--Gaca -5'
26281 5' -56.3 NC_005345.2 + 7242 0.67 0.547105
Target:  5'- cGGCGaCGACCAgGgcgaCGACGAGcagCUGc -3'
miRNA:   3'- aUCGC-GCUGGUgCa---GCUGCUCa--GACa -5'
26281 5' -56.3 NC_005345.2 + 44872 0.67 0.53638
Target:  5'- -cGCgGCGGCCGCGUCG-CGAGgcgCa-- -3'
miRNA:   3'- auCG-CGCUGGUGCAGCuGCUCa--Gaca -5'
26281 5' -56.3 NC_005345.2 + 12784 0.68 0.525728
Target:  5'- gAGCGCGcCCGCGUacgCGGCGAaaGUCggGUc -3'
miRNA:   3'- aUCGCGCuGGUGCA---GCUGCU--CAGa-CA- -5'
26281 5' -56.3 NC_005345.2 + 39967 0.68 0.524667
Target:  5'- cAGCGCGauuccucGCCACGcUCGcCGAGUCc-- -3'
miRNA:   3'- aUCGCGC-------UGGUGC-AGCuGCUCAGaca -5'
26281 5' -56.3 NC_005345.2 + 18045 0.68 0.515157
Target:  5'- --aCGCGGCCACGUugCGGCGGGUg-GUg -3'
miRNA:   3'- aucGCGCUGGUGCA--GCUGCUCAgaCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.