Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26281 | 5' | -56.3 | NC_005345.2 | + | 29968 | 0.66 | 0.645689 |
Target: 5'- -cGCGUacGugCACGUCGACGGG-Ca-- -3' miRNA: 3'- auCGCG--CugGUGCAGCUGCUCaGaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 45410 | 0.66 | 0.645689 |
Target: 5'- -cGCGCGAguucuucgaCCGCGUCGuCGAcGUCg-- -3' miRNA: 3'- auCGCGCU---------GGUGCAGCuGCU-CAGaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 13038 | 0.66 | 0.634658 |
Target: 5'- gAGCGacuuGGCCGCGUCGAgGAccuuGUCUu- -3' miRNA: 3'- aUCGCg---CUGGUGCAGCUgCU----CAGAca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 37056 | 0.66 | 0.623623 |
Target: 5'- cGGCcgGCGGCgACGUCGuCGA-UCUGUc -3' miRNA: 3'- aUCG--CGCUGgUGCAGCuGCUcAGACA- -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 6638 | 0.66 | 0.623623 |
Target: 5'- cGGUGCGACgGCGUCacCGAGcagCUGa -3' miRNA: 3'- aUCGCGCUGgUGCAGcuGCUCa--GACa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 19801 | 0.66 | 0.612597 |
Target: 5'- --aUGCGGCCgaaGUCGACG-GUCUGc -3' miRNA: 3'- aucGCGCUGGug-CAGCUGCuCAGACa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 18748 | 0.66 | 0.612597 |
Target: 5'- gAGCGCGGaCGCGUCGuCGAGg---- -3' miRNA: 3'- aUCGCGCUgGUGCAGCuGCUCagaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 11179 | 0.66 | 0.590604 |
Target: 5'- cGGCGCagguccgcaGCCugGUCGACGccGGcCUGUg -3' miRNA: 3'- aUCGCGc--------UGGugCAGCUGC--UCaGACA- -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 14768 | 0.66 | 0.590604 |
Target: 5'- cAGCGCggaGACCGcCGaCGACGGGUCc-- -3' miRNA: 3'- aUCGCG---CUGGU-GCaGCUGCUCAGaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 36873 | 0.66 | 0.590604 |
Target: 5'- gAGCG-GACCAgGUCGGCGuacGGUCcGa -3' miRNA: 3'- aUCGCgCUGGUgCAGCUGC---UCAGaCa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 3068 | 0.67 | 0.557899 |
Target: 5'- gUAGCG-GAUCGUGUCGGCGAGgacaCUGg -3' miRNA: 3'- -AUCGCgCUGGUGCAGCUGCUCa---GACa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 37730 | 0.67 | 0.557899 |
Target: 5'- cGGCGCGGCgccggCugGUCGGCGucGUCgagGUc -3' miRNA: 3'- aUCGCGCUG-----GugCAGCUGCu-CAGa--CA- -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 43913 | 0.67 | 0.557899 |
Target: 5'- cGGCGCGcAgCGCGUCGGCGA-UCa-- -3' miRNA: 3'- aUCGCGC-UgGUGCAGCUGCUcAGaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 10845 | 0.67 | 0.556816 |
Target: 5'- gGGUGUGACCGCcggcgagguaguaGUCGACGGGccaCUGc -3' miRNA: 3'- aUCGCGCUGGUG-------------CAGCUGCUCa--GACa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 14315 | 0.67 | 0.547105 |
Target: 5'- gAGUucuGCGAgCACGUCGGCGAGgggCa-- -3' miRNA: 3'- aUCG---CGCUgGUGCAGCUGCUCa--Gaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 7242 | 0.67 | 0.547105 |
Target: 5'- cGGCGaCGACCAgGgcgaCGACGAGcagCUGc -3' miRNA: 3'- aUCGC-GCUGGUgCa---GCUGCUCa--GACa -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 44872 | 0.67 | 0.53638 |
Target: 5'- -cGCgGCGGCCGCGUCG-CGAGgcgCa-- -3' miRNA: 3'- auCG-CGCUGGUGCAGCuGCUCa--Gaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 12784 | 0.68 | 0.525728 |
Target: 5'- gAGCGCGcCCGCGUacgCGGCGAaaGUCggGUc -3' miRNA: 3'- aUCGCGCuGGUGCA---GCUGCU--CAGa-CA- -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 39967 | 0.68 | 0.524667 |
Target: 5'- cAGCGCGauuccucGCCACGcUCGcCGAGUCc-- -3' miRNA: 3'- aUCGCGC-------UGGUGC-AGCuGCUCAGaca -5' |
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26281 | 5' | -56.3 | NC_005345.2 | + | 18045 | 0.68 | 0.515157 |
Target: 5'- --aCGCGGCCACGUugCGGCGGGUg-GUg -3' miRNA: 3'- aucGCGCUGGUGCA--GCUGCUCAgaCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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