miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
26283	5'	-52.8	NC_005345.2	+	22900	0.67	0.76087
	Target:  5'- aCGAGAGcgugCcGCAG-CGCGUCAUcGUCGg -3' miRNA:   3'- -GCUCUUa---GaCGUCuGCGCGGUA-CAGU- -5'
26283	5'	-52.8	NC_005345.2	+	9121	0.67	0.750256
	Target:  5'- uCGAaGAUCUGCccaaGCaCGCCAUGUCGg -3' miRNA:   3'- -GCUcUUAGACGuc--UGcGCGGUACAGU- -5'
26283	5'	-52.8	NC_005345.2	+	21445	0.67	0.727566
	Target:  5'- aGGGG--UUGCAGggcugccgugucgGCGCGCCcgGUCAc -3' miRNA:   3'- gCUCUuaGACGUC-------------UGCGCGGuaCAGU- -5'
26283	5'	-52.8	NC_005345.2	+	37716	0.68	0.706649
	Target:  5'- gCGGGAucgcgCUGCGGcGCgGCGCCGgcugGUCGg -3' miRNA:   3'- -GCUCUua---GACGUC-UG-CGCGGUa---CAGU- -5'
26283	5'	-52.8	NC_005345.2	+	34375	0.68	0.706649
	Target:  5'- cCGGGGcgUUGCAGuCGacgaGCCcgGUCGa -3' miRNA:   3'- -GCUCUuaGACGUCuGCg---CGGuaCAGU- -5'
26283	5'	-52.8	NC_005345.2	+	18713	0.68	0.691054
	Target:  5'- uCGGGggUgUGCccggucgggauguGGCGCGCCAUGa-- -3' miRNA:   3'- -GCUCuuAgACGu------------CUGCGCGGUACagu -5'
26283	5'	-52.8	NC_005345.2	+	26897	0.69	0.609685
	Target:  5'- uGAGGcgCUGCAGGCGgcgcuCGCCGaccgguacgacgcgcUGUCGg -3' miRNA:   3'- gCUCUuaGACGUCUGC-----GCGGU---------------ACAGU- -5'
26283	5'	-52.8	NC_005345.2	+	17494	0.7	0.593862
	Target:  5'- uCGGGAAggaaCUGCGGGC-CGCCG-GUCGc -3' miRNA:   3'- -GCUCUUa---GACGUCUGcGCGGUaCAGU- -5'
26283	5'	-52.8	NC_005345.2	+	30004	0.71	0.494781
	Target:  5'- -cGGggUCcgGguGGCGCGCCAUG-CGg -3' miRNA:   3'- gcUCuuAGa-CguCUGCGCGGUACaGU- -5'
26283	5'	-52.8	NC_005345.2	+	26324	1.09	0.001434
	Target:  5'- uCGAGAAUCUGCAGACGCGCCAUGUCAg -3' miRNA:   3'- -GCUCUUAGACGUCUGCGCGGUACAGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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