miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26284 3' -55.5 NC_005345.2 + 26180 1.1 0.000761
Target:  5'- cCCCGAGCGCCAAUCCGUUCUGCGACUa -3'
miRNA:   3'- -GGGCUCGCGGUUAGGCAAGACGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 19121 0.78 0.152793
Target:  5'- gCgUGGGCGCCGAUCCGcUCgGCGACc -3'
miRNA:   3'- -GgGCUCGCGGUUAGGCaAGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 10256 0.76 0.195096
Target:  5'- aCCCGGGCGCCGAUcucugCCGUccacUCgcggccgGCGACa -3'
miRNA:   3'- -GGGCUCGCGGUUA-----GGCA----AGa------CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 6408 0.71 0.376472
Target:  5'- gCCGGGUGCCGGUCCGaUCcGaGACg -3'
miRNA:   3'- gGGCUCGCGGUUAGGCaAGaCgCUGa -5'
26284 3' -55.5 NC_005345.2 + 9755 0.7 0.43852
Target:  5'- uCCCGGGCacggcgauugcgccGCCGAggCGUagCUGCGACa -3'
miRNA:   3'- -GGGCUCG--------------CGGUUagGCAa-GACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 44074 0.7 0.471154
Target:  5'- gCCGAGCGCCGA--UGggCUGCaGCUg -3'
miRNA:   3'- gGGCUCGCGGUUagGCaaGACGcUGA- -5'
26284 3' -55.5 NC_005345.2 + 43086 0.69 0.491521
Target:  5'- gCCCGAGCugcucGCCugGAUCCGgucCUGgGGCg -3'
miRNA:   3'- -GGGCUCG-----CGG--UUAGGCaa-GACgCUGa -5'
26284 3' -55.5 NC_005345.2 + 44428 0.69 0.501856
Target:  5'- aCCCGAGCGCgCuGAUCggaaugcgggUGUaCUGCGGCg -3'
miRNA:   3'- -GGGCUCGCG-G-UUAG----------GCAaGACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 31251 0.69 0.512286
Target:  5'- aCCGuguGCGCgGcgCCGUgaUCgGCGACUa -3'
miRNA:   3'- gGGCu--CGCGgUuaGGCA--AGaCGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 13195 0.69 0.512286
Target:  5'- gCCCGAGCGgCAGcCCGcgCgGCGAg- -3'
miRNA:   3'- -GGGCUCGCgGUUaGGCaaGaCGCUga -5'
26284 3' -55.5 NC_005345.2 + 14839 0.69 0.522804
Target:  5'- gCCCGAGCaGCUug-CCGggCUGCaGCg -3'
miRNA:   3'- -GGGCUCG-CGGuuaGGCaaGACGcUGa -5'
26284 3' -55.5 NC_005345.2 + 3012 0.69 0.533404
Target:  5'- gCCGAG-GCCAGUagCCGggCgGCGGCa -3'
miRNA:   3'- gGGCUCgCGGUUA--GGCaaGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 5418 0.68 0.554824
Target:  5'- gCCGAGCGUCucgCCGagUUCUucgGCGGCg -3'
miRNA:   3'- gGGCUCGCGGuuaGGC--AAGA---CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 46386 0.68 0.554824
Target:  5'- -gCGAGCaGCCAcgCCGUcCgaagGCGGCa -3'
miRNA:   3'- ggGCUCG-CGGUuaGGCAaGa---CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 37038 0.68 0.576489
Target:  5'- aCCGGGCgaGCCGggAUCCGgcCgGCGGCg -3'
miRNA:   3'- gGGCUCG--CGGU--UAGGCaaGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 27835 0.68 0.586302
Target:  5'- aCCGAGCuguacccggugugGCCGAUCC--UCgGCGGCg -3'
miRNA:   3'- gGGCUCG-------------CGGUUAGGcaAGaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 40500 0.68 0.587395
Target:  5'- gCCGcgacgaucGGCGCCGAggUGUaCUGCGACg -3'
miRNA:   3'- gGGC--------UCGCGGUUagGCAaGACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 13395 0.68 0.587395
Target:  5'- cCCCGcccCGCCGGUUCGUcCUGCGcCg -3'
miRNA:   3'- -GGGCuc-GCGGUUAGGCAaGACGCuGa -5'
26284 3' -55.5 NC_005345.2 + 47389 0.67 0.609309
Target:  5'- cCCCGcgcguaAGcCGCCGAUCCGguacgUCcaaugcaaggaaUGCGACg -3'
miRNA:   3'- -GGGC------UC-GCGGUUAGGCa----AG------------ACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 41384 0.67 0.620301
Target:  5'- aCCCGcGUGUCGAUCaCGUgCaGCGGCg -3'
miRNA:   3'- -GGGCuCGCGGUUAG-GCAaGaCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.