miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26284 3' -55.5 NC_005345.2 + 44074 0.7 0.471154
Target:  5'- gCCGAGCGCCGA--UGggCUGCaGCUg -3'
miRNA:   3'- gGGCUCGCGGUUagGCaaGACGcUGA- -5'
26284 3' -55.5 NC_005345.2 + 23564 0.66 0.664272
Target:  5'- aCCUGucgGCCGcGUCCGagCUGCGGCUg -3'
miRNA:   3'- -GGGCucgCGGU-UAGGCaaGACGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 12806 0.66 0.675216
Target:  5'- gCCCGAGCcgcucggcccGCCGGUUCGc-CUGCGcCg -3'
miRNA:   3'- -GGGCUCG----------CGGUUAGGCaaGACGCuGa -5'
26284 3' -55.5 NC_005345.2 + 21378 0.66 0.707758
Target:  5'- aCCGAgcuGCGCCcGUUCGUcCUGCaGCg -3'
miRNA:   3'- gGGCU---CGCGGuUAGGCAaGACGcUGa -5'
26284 3' -55.5 NC_005345.2 + 14839 0.69 0.522804
Target:  5'- gCCCGAGCaGCUug-CCGggCUGCaGCg -3'
miRNA:   3'- -GGGCUCG-CGGuuaGGCaaGACGcUGa -5'
26284 3' -55.5 NC_005345.2 + 5418 0.68 0.554824
Target:  5'- gCCGAGCGUCucgCCGagUUCUucgGCGGCg -3'
miRNA:   3'- gGGCUCGCGGuuaGGC--AAGA---CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 40500 0.68 0.587395
Target:  5'- gCCGcgacgaucGGCGCCGAggUGUaCUGCGACg -3'
miRNA:   3'- gGGC--------UCGCGGUUagGCAaGACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 13395 0.68 0.587395
Target:  5'- cCCCGcccCGCCGGUUCGUcCUGCGcCg -3'
miRNA:   3'- -GGGCuc-GCGGUUAGGCAaGACGCuGa -5'
26284 3' -55.5 NC_005345.2 + 6408 0.71 0.376472
Target:  5'- gCCGGGUGCCGGUCCGaUCcGaGACg -3'
miRNA:   3'- gGGCUCGCGGUUAGGCaAGaCgCUGa -5'
26284 3' -55.5 NC_005345.2 + 12312 0.66 0.663176
Target:  5'- cCCCGAgugcgcgGCGCCGAUCgGUcguccCUGCaaGACg -3'
miRNA:   3'- -GGGCU-------CGCGGUUAGgCAa----GACG--CUGa -5'
26284 3' -55.5 NC_005345.2 + 4116 0.67 0.620301
Target:  5'- cCCCGAGCGgUugg-CGUUCgaGCGGCUg -3'
miRNA:   3'- -GGGCUCGCgGuuagGCAAGa-CGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 14392 0.67 0.620301
Target:  5'- gCCG-GUGCCGAUCCGg-CUGC-ACg -3'
miRNA:   3'- gGGCuCGCGGUUAGGCaaGACGcUGa -5'
26284 3' -55.5 NC_005345.2 + 43086 0.69 0.491521
Target:  5'- gCCCGAGCugcucGCCugGAUCCGgucCUGgGGCg -3'
miRNA:   3'- -GGGCUCG-----CGG--UUAGGCaa-GACgCUGa -5'
26284 3' -55.5 NC_005345.2 + 10763 0.67 0.631302
Target:  5'- gCCGAGCcccugccggccGUCGAgacagCCGcgCUGCGGCa -3'
miRNA:   3'- gGGCUCG-----------CGGUUa----GGCaaGACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 13195 0.69 0.512286
Target:  5'- gCCCGAGCGgCAGcCCGcgCgGCGAg- -3'
miRNA:   3'- -GGGCUCGCgGUUaGGCaaGaCGCUga -5'
26284 3' -55.5 NC_005345.2 + 47389 0.67 0.609309
Target:  5'- cCCCGcgcguaAGcCGCCGAUCCGguacgUCcaaugcaaggaaUGCGACg -3'
miRNA:   3'- -GGGC------UC-GCGGUUAGGCa----AG------------ACGCUGa -5'
26284 3' -55.5 NC_005345.2 + 46312 0.67 0.642305
Target:  5'- gCCCGAGCGCaCGcugUCGgcCUcGCGGCg -3'
miRNA:   3'- -GGGCUCGCG-GUua-GGCaaGA-CGCUGa -5'
26284 3' -55.5 NC_005345.2 + 33436 0.66 0.67303
Target:  5'- uCCCGAGCGCCcgggGAUUCGccgaggaccugCaGCGGCa -3'
miRNA:   3'- -GGGCUCGCGG----UUAGGCaa---------GaCGCUGa -5'
26284 3' -55.5 NC_005345.2 + 31251 0.69 0.512286
Target:  5'- aCCGuguGCGCgGcgCCGUgaUCgGCGACUa -3'
miRNA:   3'- gGGCu--CGCGgUuaGGCA--AGaCGCUGA- -5'
26284 3' -55.5 NC_005345.2 + 27835 0.68 0.586302
Target:  5'- aCCGAGCuguacccggugugGCCGAUCC--UCgGCGGCg -3'
miRNA:   3'- gGGCUCG-------------CGGUUAGGcaAGaCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.