miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 3' -64 NC_005345.2 + 23122 1.08 0.000167
Target:  5'- gCGAGCGCCGGUGCGCUCCCGCGUCCGg -3'
miRNA:   3'- -GCUCGCGGCCACGCGAGGGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 45908 0.77 0.043526
Target:  5'- aCGAGCGCCGcgugcacaGUGCGCUgCCCGaacuGUCCGc -3'
miRNA:   3'- -GCUCGCGGC--------CACGCGA-GGGCg---CAGGC- -5'
26289 3' -64 NC_005345.2 + 9886 0.76 0.060527
Target:  5'- cCGAcGCGCCGcgcacgaacGUGCGCUUCC-CGUCCGg -3'
miRNA:   3'- -GCU-CGCGGC---------CACGCGAGGGcGCAGGC- -5'
26289 3' -64 NC_005345.2 + 18556 0.74 0.081637
Target:  5'- gGGGCGCUcgccgGGUGCGCgCCCaGCGUCgGg -3'
miRNA:   3'- gCUCGCGG-----CCACGCGaGGG-CGCAGgC- -5'
26289 3' -64 NC_005345.2 + 159 0.72 0.115651
Target:  5'- cCGAGCggGCCGGcGUGCUCCCcacacGCGUCa- -3'
miRNA:   3'- -GCUCG--CGGCCaCGCGAGGG-----CGCAGgc -5'
26289 3' -64 NC_005345.2 + 35937 0.71 0.128543
Target:  5'- gGGGCGCgGgGUGUGCUCgCCGCGcgggcugCCGc -3'
miRNA:   3'- gCUCGCGgC-CACGCGAG-GGCGCa------GGC- -5'
26289 3' -64 NC_005345.2 + 9612 0.7 0.15434
Target:  5'- gCGAGUGCCucgcgcaUGCGCUCgCCGUGcCCGa -3'
miRNA:   3'- -GCUCGCGGcc-----ACGCGAG-GGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 41259 0.7 0.162531
Target:  5'- aCGAGCaGCC-GUGCGCcgCCUcgGCGUCCc -3'
miRNA:   3'- -GCUCG-CGGcCACGCGa-GGG--CGCAGGc -5'
26289 3' -64 NC_005345.2 + 35001 0.7 0.162531
Target:  5'- -cGGCGCCGGgGCGCUgCgGCGgCCa -3'
miRNA:   3'- gcUCGCGGCCaCGCGAgGgCGCaGGc -5'
26289 3' -64 NC_005345.2 + 15064 0.69 0.180093
Target:  5'- gCGGGCGCCGGccUGCaGCgCCUGCGUg-- -3'
miRNA:   3'- -GCUCGCGGCC--ACG-CGaGGGCGCAggc -5'
26289 3' -64 NC_005345.2 + 31200 0.69 0.18474
Target:  5'- gCGGGUGCggcgGGUGCGCaCCCGgGUgCGg -3'
miRNA:   3'- -GCUCGCGg---CCACGCGaGGGCgCAgGC- -5'
26289 3' -64 NC_005345.2 + 11638 0.69 0.199318
Target:  5'- gCGAGCGCacc-GCGCcgcagCCCGCGcCCGg -3'
miRNA:   3'- -GCUCGCGgccaCGCGa----GGGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 43002 0.68 0.204396
Target:  5'- uCGAugaGCCGGUGCGa--CCGgGUCCGc -3'
miRNA:   3'- -GCUcg-CGGCCACGCgagGGCgCAGGC- -5'
26289 3' -64 NC_005345.2 + 26634 0.68 0.209586
Target:  5'- uCGGGCGcCCGGccggGCGa-CCCGUGUCgGg -3'
miRNA:   3'- -GCUCGC-GGCCa---CGCgaGGGCGCAGgC- -5'
26289 3' -64 NC_005345.2 + 46618 0.68 0.214888
Target:  5'- -cGGCGCCGG-GUGC-CCCGuCG-CCGu -3'
miRNA:   3'- gcUCGCGGCCaCGCGaGGGC-GCaGGC- -5'
26289 3' -64 NC_005345.2 + 34788 0.68 0.220306
Target:  5'- cCGAgcuGCGCCGGgucGCGgUCCuCGCGcacgCCGu -3'
miRNA:   3'- -GCU---CGCGGCCa--CGCgAGG-GCGCa---GGC- -5'
26289 3' -64 NC_005345.2 + 31446 0.68 0.23149
Target:  5'- uGAGCGCgGGUGCGaggcgCCgGgGUgCGg -3'
miRNA:   3'- gCUCGCGgCCACGCga---GGgCgCAgGC- -5'
26289 3' -64 NC_005345.2 + 32950 0.68 0.23149
Target:  5'- uCGAGCGCgaGGcgGaCGCcggCCGCGUCCGc -3'
miRNA:   3'- -GCUCGCGg-CCa-C-GCGag-GGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 39276 0.68 0.23149
Target:  5'- gCGGcGCGUCGGgacUGCUCgaCCGCGUCCu -3'
miRNA:   3'- -GCU-CGCGGCCac-GCGAG--GGCGCAGGc -5'
26289 3' -64 NC_005345.2 + 38445 0.67 0.241962
Target:  5'- aCGAGCugccgcaggacagGCCGGgcacaGCGCgggcacuUCCCGCG-CCGc -3'
miRNA:   3'- -GCUCG-------------CGGCCa----CGCG-------AGGGCGCaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.