miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 3' -64 NC_005345.2 + 45908 0.77 0.043526
Target:  5'- aCGAGCGCCGcgugcacaGUGCGCUgCCCGaacuGUCCGc -3'
miRNA:   3'- -GCUCGCGGC--------CACGCGA-GGGCg---CAGGC- -5'
26289 3' -64 NC_005345.2 + 12702 0.66 0.301722
Target:  5'- -uGGCGgUGGUGgGCgaugcagCCCGUGUUCGc -3'
miRNA:   3'- gcUCGCgGCCACgCGa------GGGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 31296 0.66 0.287824
Target:  5'- cCGAGgauuccCGCCGG-GCGCUgCUGCGcggUCUGg -3'
miRNA:   3'- -GCUC------GCGGCCaCGCGAgGGCGC---AGGC- -5'
26289 3' -64 NC_005345.2 + 6711 0.66 0.281066
Target:  5'- aCGAGCaGCCGGcgggcacggUGUGCaagCCCaCGUCCc -3'
miRNA:   3'- -GCUCG-CGGCC---------ACGCGa--GGGcGCAGGc -5'
26289 3' -64 NC_005345.2 + 14841 0.67 0.243149
Target:  5'- cCGAGCagcuuGCCGGgcugcagcggGCGCUCgaCGCGgCCGa -3'
miRNA:   3'- -GCUCG-----CGGCCa---------CGCGAGg-GCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 39276 0.68 0.23149
Target:  5'- gCGGcGCGUCGGgacUGCUCgaCCGCGUCCu -3'
miRNA:   3'- -GCU-CGCGGCCac-GCGAG--GGCGCAGGc -5'
26289 3' -64 NC_005345.2 + 33594 0.66 0.301722
Target:  5'- gCGGuCGCCGGUGCcgccguGUUCuccgCCGCGUUCGu -3'
miRNA:   3'- -GCUcGCGGCCACG------CGAG----GGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 6409 0.66 0.294709
Target:  5'- cCGGGUGCCGGUccgauccgaGaCGUUCCUGCuGUCg- -3'
miRNA:   3'- -GCUCGCGGCCA---------C-GCGAGGGCG-CAGgc -5'
26289 3' -64 NC_005345.2 + 5731 0.67 0.255293
Target:  5'- gCGGGCGUCGaacuUGgGCaCUCGCGUCCa -3'
miRNA:   3'- -GCUCGCGGCc---ACgCGaGGGCGCAGGc -5'
26289 3' -64 NC_005345.2 + 11638 0.69 0.199318
Target:  5'- gCGAGCGCacc-GCGCcgcagCCCGCGcCCGg -3'
miRNA:   3'- -GCUCGCGgccaCGCGa----GGGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 18556 0.74 0.081637
Target:  5'- gGGGCGCUcgccgGGUGCGCgCCCaGCGUCgGg -3'
miRNA:   3'- gCUCGCGG-----CCACGCGaGGG-CGCAGgC- -5'
26289 3' -64 NC_005345.2 + 9612 0.7 0.15434
Target:  5'- gCGAGUGCCucgcgcaUGCGCUCgCCGUGcCCGa -3'
miRNA:   3'- -GCUCGCGGcc-----ACGCGAG-GGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 22593 0.66 0.294709
Target:  5'- gCGAGCcCCGGgcguugcaUGCGCUgcgCCUGCGgugguUCCGg -3'
miRNA:   3'- -GCUCGcGGCC--------ACGCGA---GGGCGC-----AGGC- -5'
26289 3' -64 NC_005345.2 + 7024 0.66 0.306707
Target:  5'- uGAGUG-CGGUccccuucgugaacgGCGCUCCgGuCGUCCu -3'
miRNA:   3'- gCUCGCgGCCA--------------CGCGAGGgC-GCAGGc -5'
26289 3' -64 NC_005345.2 + 42957 0.67 0.267929
Target:  5'- aGGGCGCCGcGgaacGCGCggaaCUGCG-CCGg -3'
miRNA:   3'- gCUCGCGGC-Ca---CGCGag--GGCGCaGGC- -5'
26289 3' -64 NC_005345.2 + 46618 0.68 0.214888
Target:  5'- -cGGCGCCGG-GUGC-CCCGuCG-CCGu -3'
miRNA:   3'- gcUCGCGGCCaCGCGaGGGC-GCaGGC- -5'
26289 3' -64 NC_005345.2 + 34788 0.68 0.220306
Target:  5'- cCGAgcuGCGCCGGgucGCGgUCCuCGCGcacgCCGu -3'
miRNA:   3'- -GCU---CGCGGCCa--CGCgAGG-GCGCa---GGC- -5'
26289 3' -64 NC_005345.2 + 31446 0.68 0.23149
Target:  5'- uGAGCGCgGGUGCGaggcgCCgGgGUgCGg -3'
miRNA:   3'- gCUCGCGgCCACGCga---GGgCgCAgGC- -5'
26289 3' -64 NC_005345.2 + 32950 0.68 0.23149
Target:  5'- uCGAGCGCgaGGcgGaCGCcggCCGCGUCCGc -3'
miRNA:   3'- -GCUCGCGg-CCa-C-GCGag-GGCGCAGGC- -5'
26289 3' -64 NC_005345.2 + 5638 0.67 0.267929
Target:  5'- gCGAGCGCCGG---GUUCgCCGCGaCCu -3'
miRNA:   3'- -GCUCGCGGCCacgCGAG-GGCGCaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.