miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 5' -52.5 NC_005345.2 + 392 0.67 0.81414
Target:  5'- cACGUGg---CGAAGGucguGCACCCGcGGCc -3'
miRNA:   3'- cUGCACagcaGUUUCU----UGUGGGC-CCG- -5'
26289 5' -52.5 NC_005345.2 + 931 0.68 0.753706
Target:  5'- cGGCGUcacGUCGUCGAGGucgcGCACuaGGuGCu -3'
miRNA:   3'- -CUGCA---CAGCAGUUUCu---UGUGggCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 1256 0.67 0.804499
Target:  5'- uGCGUGcggaucUUGUCGAGGuGCGCCUcGGCu -3'
miRNA:   3'- cUGCAC------AGCAGUUUCuUGUGGGcCCG- -5'
26289 5' -52.5 NC_005345.2 + 1534 0.68 0.732402
Target:  5'- --gGUGUCGggcgCGucGAGCcaaCCGGGCa -3'
miRNA:   3'- cugCACAGCa---GUuuCUUGug-GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 2523 0.69 0.677526
Target:  5'- aAUGUGUCaacggCGAcGGGGCACCCGGcGCc -3'
miRNA:   3'- cUGCACAGca---GUU-UCUUGUGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 3930 0.7 0.629375
Target:  5'- --gGUGUCGUCGAGGugcucgccgcggccGGCAgccuCUCGGGCg -3'
miRNA:   3'- cugCACAGCAGUUUC--------------UUGU----GGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 3950 0.72 0.511334
Target:  5'- gGGCGUcuGUaCGUCGAGGcGACcCCCGGGUu -3'
miRNA:   3'- -CUGCA--CA-GCAGUUUC-UUGuGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 6845 0.66 0.823583
Target:  5'- aACGaacGUUGUCGAGGGACGCCCa--- -3'
miRNA:   3'- cUGCa--CAGCAGUUUCUUGUGGGcccg -5'
26289 5' -52.5 NC_005345.2 + 7084 0.67 0.773468
Target:  5'- cGACGcUGUCGcCGAGcagccgguaacucGGGCugCCGGuGCg -3'
miRNA:   3'- -CUGC-ACAGCaGUUU-------------CUUGugGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 7229 0.68 0.721588
Target:  5'- cGACcgGUGUCGUCGgcGAcgACCaGGGCg -3'
miRNA:   3'- -CUG--CACAGCAGUuuCUugUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 8898 0.66 0.859159
Target:  5'- cGACGUcGcCGUCGAucgucucgauccGGAACuGCCCGaccGGCa -3'
miRNA:   3'- -CUGCA-CaGCAGUU------------UCUUG-UGGGC---CCG- -5'
26289 5' -52.5 NC_005345.2 + 9308 0.67 0.81414
Target:  5'- cGGCGUugaguUCGUCG----GCgACCCGGGCg -3'
miRNA:   3'- -CUGCAc----AGCAGUuucuUG-UGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 9437 0.71 0.543754
Target:  5'- --gGUGUCGUgGcccGAGCucguCCCGGGCg -3'
miRNA:   3'- cugCACAGCAgUuu-CUUGu---GGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 9445 0.67 0.774494
Target:  5'- aGCG-GUCGcUCucgugcCACCCGGGCg -3'
miRNA:   3'- cUGCaCAGC-AGuuucuuGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 9625 0.67 0.804499
Target:  5'- cGACcUGcUCGaUCGGccGGGuccacucggGCACCCGGGCa -3'
miRNA:   3'- -CUGcAC-AGC-AGUU--UCU---------UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 10072 0.68 0.76417
Target:  5'- cGACGc--CGUCGAGGcgcucguCAUCCGGGCc -3'
miRNA:   3'- -CUGCacaGCAGUUUCuu-----GUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 10227 0.66 0.859159
Target:  5'- cACGacccCGUCGAGGucaagcucGACACCgGGGCa -3'
miRNA:   3'- cUGCaca-GCAGUUUC--------UUGUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 14350 0.71 0.565737
Target:  5'- cGGCGUG-CG-CGAGGAccGCgACCCGGcGCa -3'
miRNA:   3'- -CUGCACaGCaGUUUCU--UG-UGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 16039 0.68 0.721588
Target:  5'- -cCGUcGUUGUCGccGAGCGCgauccggguCCGGGCg -3'
miRNA:   3'- cuGCA-CAGCAGUuuCUUGUG---------GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 17448 0.66 0.832816
Target:  5'- --gGUGaUGUCGAGcguGAACGCCCaacGGGCu -3'
miRNA:   3'- cugCACaGCAGUUU---CUUGUGGG---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.