miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 5' -52.5 NC_005345.2 + 40714 0.76 0.298786
Target:  5'- -cCGUGcUCGUCGucGAcaGCgACCCGGGCa -3'
miRNA:   3'- cuGCAC-AGCAGUuuCU--UG-UGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 33868 0.68 0.76417
Target:  5'- aGGCGUucggCGUCGAcguggGGGACGCcgcucgcgcggCCGGGCa -3'
miRNA:   3'- -CUGCAca--GCAGUU-----UCUUGUG-----------GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 24778 0.67 0.804499
Target:  5'- uGCGggcGUCGUCcgaccucggcAAGGugguGCAgCCGGGCg -3'
miRNA:   3'- cUGCa--CAGCAG----------UUUCu---UGUgGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 44669 0.66 0.859159
Target:  5'- cACGgcUCGUCGAGccGGACACggccgCCGGGCc -3'
miRNA:   3'- cUGCacAGCAGUUU--CUUGUG-----GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 26740 0.73 0.469427
Target:  5'- cGACGUGaUCGcCGAGGAACucgacgagucCCCGGcGCg -3'
miRNA:   3'- -CUGCAC-AGCaGUUUCUUGu---------GGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 3950 0.72 0.511334
Target:  5'- gGGCGUcuGUaCGUCGAGGcGACcCCCGGGUu -3'
miRNA:   3'- -CUGCA--CA-GCAGUUUC-UUGuGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 14350 0.71 0.565737
Target:  5'- cGGCGUG-CG-CGAGGAccGCgACCCGGcGCa -3'
miRNA:   3'- -CUGCACaGCaGUUUCU--UG-UGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 30745 0.7 0.621518
Target:  5'- ----cGUCGUCGAGGucGAgACgCCGGGCa -3'
miRNA:   3'- cugcaCAGCAGUUUC--UUgUG-GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 38890 0.69 0.666369
Target:  5'- --aGUGgaCGgCAGAGAucgGCGCCCGGGUg -3'
miRNA:   3'- cugCACa-GCaGUUUCU---UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 10072 0.68 0.76417
Target:  5'- cGACGc--CGUCGAGGcgcucguCAUCCGGGCc -3'
miRNA:   3'- -CUGCacaGCAGUUUCuu-----GUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 24266 0.69 0.677526
Target:  5'- cACGUcGUCGgcauccucggUCAAGGGugACCCGGcGUg -3'
miRNA:   3'- cUGCA-CAGC----------AGUUUCUugUGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 25703 0.69 0.655179
Target:  5'- cGGCGUGaccgGUCc-GGAcggcgaacccgACACCCGGGCg -3'
miRNA:   3'- -CUGCACag--CAGuuUCU-----------UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 39316 0.76 0.329545
Target:  5'- uGACGUccugGUCGUCGAGGAcuaugagGCACCCcucGGCg -3'
miRNA:   3'- -CUGCA----CAGCAGUUUCU-------UGUGGGc--CCG- -5'
26289 5' -52.5 NC_005345.2 + 7229 0.68 0.721588
Target:  5'- cGACcgGUGUCGUCGgcGAcgACCaGGGCg -3'
miRNA:   3'- -CUG--CACAGCAGUuuCUugUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 33413 0.75 0.346203
Target:  5'- cGGCGUcggguacguaucgGUCGUCcc-GAGCGCCCGGGg -3'
miRNA:   3'- -CUGCA-------------CAGCAGuuuCUUGUGGGCCCg -5'
26289 5' -52.5 NC_005345.2 + 33487 0.7 0.63162
Target:  5'- cGACGgugcagGUCGgcgCGGAGAucggcgaGCAgUCCGGGCa -3'
miRNA:   3'- -CUGCa-----CAGCa--GUUUCU-------UGU-GGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 29447 0.68 0.753706
Target:  5'- cGugG-GUCGcCAcguacGAGGACACgaaCGGGCa -3'
miRNA:   3'- -CugCaCAGCaGU-----UUCUUGUGg--GCCCG- -5'
26289 5' -52.5 NC_005345.2 + 1256 0.67 0.804499
Target:  5'- uGCGUGcggaucUUGUCGAGGuGCGCCUcGGCu -3'
miRNA:   3'- cUGCAC------AGCAGUUUCuUGUGGGcCCG- -5'
26289 5' -52.5 NC_005345.2 + 28118 0.74 0.382202
Target:  5'- cGGCGcG-CGUgcCGAGGAacGCACCCGGGCc -3'
miRNA:   3'- -CUGCaCaGCA--GUUUCU--UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 9437 0.71 0.543754
Target:  5'- --gGUGUCGUgGcccGAGCucguCCCGGGCg -3'
miRNA:   3'- cugCACAGCAgUuu-CUUGu---GGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.