miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26290 3' -55 NC_005345.2 + 16064 0.65 0.755201
Target:  5'- gGGUCCgGGcgGUgCGuGGcaGCugCCGCa -3'
miRNA:   3'- -CCAGGaCUuaCA-GCuCC--UGugGGCGc -5'
26290 3' -55 NC_005345.2 + 35600 0.66 0.744858
Target:  5'- --cCCgUGGAUgugGUCGAcGGACagcuGCCCGCGg -3'
miRNA:   3'- ccaGG-ACUUA---CAGCU-CCUG----UGGGCGC- -5'
26290 3' -55 NC_005345.2 + 14892 0.66 0.7344
Target:  5'- cGGUCaaGggUcagGUCGAGGAcCGCguUCGCGg -3'
miRNA:   3'- -CCAGgaCuuA---CAGCUCCU-GUG--GGCGC- -5'
26290 3' -55 NC_005345.2 + 17277 0.66 0.724901
Target:  5'- cGGUCCUGGucugcgcgcgggucuUGUCGGccGGACgggcgaACCCGUc -3'
miRNA:   3'- -CCAGGACUu--------------ACAGCU--CCUG------UGGGCGc -5'
26290 3' -55 NC_005345.2 + 21721 0.66 0.723841
Target:  5'- uGGUCCUGuacggGUCuGGGGGaaaccgGCCCGgGa -3'
miRNA:   3'- -CCAGGACuua--CAG-CUCCUg-----UGGGCgC- -5'
26290 3' -55 NC_005345.2 + 31394 0.66 0.713191
Target:  5'- gGGUCCUaGGUGagggUGAGGgcgagugcGCACCCgGCGa -3'
miRNA:   3'- -CCAGGAcUUACa---GCUCC--------UGUGGG-CGC- -5'
26290 3' -55 NC_005345.2 + 20384 0.66 0.713191
Target:  5'- gGGUCgaUG-GUGUUGAccgcGGGCGCCUGCa -3'
miRNA:   3'- -CCAGg-ACuUACAGCU----CCUGUGGGCGc -5'
26290 3' -55 NC_005345.2 + 25712 0.66 0.713191
Target:  5'- cGGUCCgGAcgG-CGAacccGACACCCGgGc -3'
miRNA:   3'- -CCAGGaCUuaCaGCUc---CUGUGGGCgC- -5'
26290 3' -55 NC_005345.2 + 8362 0.66 0.702461
Target:  5'- cGUCgUGAGUGUCGGcgagguguGGAa--CCGCGg -3'
miRNA:   3'- cCAGgACUUACAGCU--------CCUgugGGCGC- -5'
26290 3' -55 NC_005345.2 + 46249 0.67 0.658971
Target:  5'- cGGUCCgccGAuccgcucGUCGAGGcCACcgCCGCGu -3'
miRNA:   3'- -CCAGGa--CUua-----CAGCUCCuGUG--GGCGC- -5'
26290 3' -55 NC_005345.2 + 48096 0.67 0.6513
Target:  5'- cGUCCUGAuggaaagaggcucGUCGAGGugaucccACACUCGCu -3'
miRNA:   3'- cCAGGACUua-----------CAGCUCC-------UGUGGGCGc -5'
26290 3' -55 NC_005345.2 + 38649 0.68 0.637034
Target:  5'- cGUCCUGcccGUCGAGGGugccguucauCugCCGCu -3'
miRNA:   3'- cCAGGACuuaCAGCUCCU----------GugGGCGc -5'
26290 3' -55 NC_005345.2 + 34971 0.68 0.626054
Target:  5'- cGUCCUGGucGUCGAGGGCGugcagguacUCgGCGc -3'
miRNA:   3'- cCAGGACUuaCAGCUCCUGU---------GGgCGC- -5'
26290 3' -55 NC_005345.2 + 34681 0.68 0.626054
Target:  5'- aGUCgaGGGcGUCGGGGAUGCCgaGCGa -3'
miRNA:   3'- cCAGgaCUUaCAGCUCCUGUGGg-CGC- -5'
26290 3' -55 NC_005345.2 + 43763 0.69 0.550922
Target:  5'- cGGgCCUGAGUGgacucgcccgucaucCGAGGcaGCGCCuCGCGa -3'
miRNA:   3'- -CCaGGACUUACa--------------GCUCC--UGUGG-GCGC- -5'
26290 3' -55 NC_005345.2 + 33279 0.69 0.539158
Target:  5'- gGGUCC---AUGUCGAGGAUGCggGCGg -3'
miRNA:   3'- -CCAGGacuUACAGCUCCUGUGggCGC- -5'
26290 3' -55 NC_005345.2 + 32066 0.69 0.528539
Target:  5'- uGUCCgagGAcgGUgCGAGcGAguCCCGCGa -3'
miRNA:   3'- cCAGGa--CUuaCA-GCUC-CUguGGGCGC- -5'
26290 3' -55 NC_005345.2 + 23521 0.7 0.466677
Target:  5'- cGUCCgcgccuuccgcUGGAaGUCGAGGaACGCCUGCu -3'
miRNA:   3'- cCAGG-----------ACUUaCAGCUCC-UGUGGGCGc -5'
26290 3' -55 NC_005345.2 + 39319 0.7 0.466677
Target:  5'- cGUCCUGGucGUCGAGGACuaugaggcACCCcucgGCGu -3'
miRNA:   3'- cCAGGACUuaCAGCUCCUG--------UGGG----CGC- -5'
26290 3' -55 NC_005345.2 + 29612 0.71 0.437174
Target:  5'- cGGUCCUGucc-UCGAugGGGCugCCGCc -3'
miRNA:   3'- -CCAGGACuuacAGCU--CCUGugGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.