miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 5' -62.6 NC_005345.2 + 38060 0.69 0.219176
Target:  5'- cGCGGUGGcGGggAUUGCGCCgCCgggcGCCACg -3'
miRNA:   3'- -UGCCGCCuUCa-UGGCGCGG-GG----CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 9661 0.69 0.213674
Target:  5'- -gGGCGGGcugacGUACCGCgaGCgCCGCCGg -3'
miRNA:   3'- ugCCGCCUu----CAUGGCG--CGgGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 30326 0.7 0.160649
Target:  5'- aACGGUcgaGGAcuaccAGgcCCGCGCCgCCGUCACc -3'
miRNA:   3'- -UGCCG---CCU-----UCauGGCGCGG-GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 26781 0.76 0.065473
Target:  5'- uGCGGCGGAucgugGCCgGCGCCgCGUCGCa -3'
miRNA:   3'- -UGCCGCCUuca--UGG-CGCGGgGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 48856 0.67 0.274282
Target:  5'- -gGGCGGGgcGGUGCUGCGUgCC-CUACc -3'
miRNA:   3'- ugCCGCCU--UCAUGGCGCGgGGcGGUG- -5'
26291 5' -62.6 NC_005345.2 + 11699 0.68 0.242405
Target:  5'- -aGGCGGAucgacgGCCGaccagcggGCCgCCGCCGCg -3'
miRNA:   3'- ugCCGCCUuca---UGGCg-------CGG-GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 3005 0.69 0.20829
Target:  5'- cCGGUGGAAcccACCGCGUUccgaggCCGCCGCu -3'
miRNA:   3'- uGCCGCCUUca-UGGCGCGG------GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 11665 0.76 0.063675
Target:  5'- cCGGCGGGAacgucGUACCGCucGCCCgCGCUGCa -3'
miRNA:   3'- uGCCGCCUU-----CAUGGCG--CGGG-GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 20188 0.68 0.2418
Target:  5'- uGCGGCGGGGccuUGUCGUGCguguccccauagaCCCGCCGCa -3'
miRNA:   3'- -UGCCGCCUUc--AUGGCGCG-------------GGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 28374 0.76 0.05695
Target:  5'- gGCGGCGGAuaccAGgGCaCGCGCCgCCGCgGCg -3'
miRNA:   3'- -UGCCGCCU----UCaUG-GCGCGG-GGCGgUG- -5'
26291 5' -62.6 NC_005345.2 + 16890 0.69 0.21313
Target:  5'- gGCGGCGGAAG----GCGCCCgucgaggcacugcUGCCGCu -3'
miRNA:   3'- -UGCCGCCUUCauggCGCGGG-------------GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 17939 0.68 0.230544
Target:  5'- cCGGCcGcacccGGGUGcgcacCCGCGCaCCCGCCGCg -3'
miRNA:   3'- uGCCGcC-----UUCAU-----GGCGCG-GGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 33593 0.69 0.192839
Target:  5'- cGCGGuCGccGGUGCCGCcguguuCUCCGCCGCg -3'
miRNA:   3'- -UGCC-GCcuUCAUGGCGc-----GGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 14351 0.7 0.183104
Target:  5'- gGCGuGCGcGAGG-ACCGCGaCCCGgCGCa -3'
miRNA:   3'- -UGC-CGC-CUUCaUGGCGCgGGGCgGUG- -5'
26291 5' -62.6 NC_005345.2 + 5269 0.71 0.152382
Target:  5'- uGCaGCGGGA----CGCGCUCCGCCGCg -3'
miRNA:   3'- -UGcCGCCUUcaugGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 5662 0.75 0.069217
Target:  5'- cCGGCGGGcccggaccgAGccgACCGCGCUgCGCCGCg -3'
miRNA:   3'- uGCCGCCU---------UCa--UGGCGCGGgGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 8315 0.67 0.281047
Target:  5'- cGCGGCGGAacuGGUcGCCGaacaCCCCccguucccguGCCACu -3'
miRNA:   3'- -UGCCGCCU---UCA-UGGCgc--GGGG----------CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 1148 0.67 0.279003
Target:  5'- uUGGCGGucGUgacugcucgguccgGCUGCGCCUC-CCACc -3'
miRNA:   3'- uGCCGCCuuCA--------------UGGCGCGGGGcGGUG- -5'
26291 5' -62.6 NC_005345.2 + 21812 0.67 0.267648
Target:  5'- gGCGGCGGccGAGgguCCGCagaucGCCUCucaGCCACu -3'
miRNA:   3'- -UGCCGCC--UUCau-GGCG-----CGGGG---CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 18459 0.68 0.248524
Target:  5'- gUGGUGGAccgGGUcCCGCGaCCCgaagaugcuCGCCGCg -3'
miRNA:   3'- uGCCGCCU---UCAuGGCGC-GGG---------GCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.