Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26291 | 5' | -62.6 | NC_005345.2 | + | 36501 | 0.78 | 0.040656 |
Target: 5'- aACGGCGGccG-ACCGCGCCCCGgCGa -3' miRNA: 3'- -UGCCGCCuuCaUGGCGCGGGGCgGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 3005 | 0.69 | 0.20829 |
Target: 5'- cCGGUGGAAcccACCGCGUUccgaggCCGCCGCu -3' miRNA: 3'- uGCCGCCUUca-UGGCGCGG------GGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 9661 | 0.69 | 0.213674 |
Target: 5'- -gGGCGGGcugacGUACCGCgaGCgCCGCCGg -3' miRNA: 3'- ugCCGCCUu----CAUGGCG--CGgGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 20447 | 0.66 | 0.339945 |
Target: 5'- gUGGaaGAGGU-CCGCGCCCgaguaGCCAa -3' miRNA: 3'- uGCCgcCUUCAuGGCGCGGGg----CGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 5662 | 0.75 | 0.069217 |
Target: 5'- cCGGCGGGcccggaccgAGccgACCGCGCUgCGCCGCg -3' miRNA: 3'- uGCCGCCU---------UCa--UGGCGCGGgGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 10677 | 0.73 | 0.104593 |
Target: 5'- cGCGGCgcgGGAAGUGcCCGCGCUgUGCC-Cg -3' miRNA: 3'- -UGCCG---CCUUCAU-GGCGCGGgGCGGuG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 5269 | 0.71 | 0.152382 |
Target: 5'- uGCaGCGGGA----CGCGCUCCGCCGCg -3' miRNA: 3'- -UGcCGCCUUcaugGCGCGGGGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 2743 | 0.71 | 0.155231 |
Target: 5'- gACGGCGGucgacAAGUGCCGCcuucggacggcgugGCUgcucgCCGCCGCc -3' miRNA: 3'- -UGCCGCC-----UUCAUGGCG--------------CGG-----GGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 14351 | 0.7 | 0.183104 |
Target: 5'- gGCGuGCGcGAGG-ACCGCGaCCCGgCGCa -3' miRNA: 3'- -UGC-CGC-CUUCaUGGCGCgGGGCgGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 22010 | 0.69 | 0.203025 |
Target: 5'- cACGGCGGca-UGCCGgG-CCCGCCGg -3' miRNA: 3'- -UGCCGCCuucAUGGCgCgGGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 10144 | 0.69 | 0.187916 |
Target: 5'- gGCGGCGGccgcuCUGCggaGCgCCCGCCGCa -3' miRNA: 3'- -UGCCGCCuucauGGCG---CG-GGGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 30326 | 0.7 | 0.160649 |
Target: 5'- aACGGUcgaGGAcuaccAGgcCCGCGCCgCCGUCACc -3' miRNA: 3'- -UGCCG---CCU-----UCauGGCGCGG-GGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 28374 | 0.76 | 0.05695 |
Target: 5'- gGCGGCGGAuaccAGgGCaCGCGCCgCCGCgGCg -3' miRNA: 3'- -UGCCGCCU----UCaUG-GCGCGG-GGCGgUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 33593 | 0.69 | 0.192839 |
Target: 5'- cGCGGuCGccGGUGCCGCcguguuCUCCGCCGCg -3' miRNA: 3'- -UGCC-GCcuUCAUGGCGc-----GGGGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 11665 | 0.76 | 0.063675 |
Target: 5'- cCGGCGGGAacgucGUACCGCucGCCCgCGCUGCa -3' miRNA: 3'- uGCCGCCUU-----CAUGGCG--CGGG-GCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 5505 | 0.7 | 0.160649 |
Target: 5'- cCGaGCGGGGucgcuacUACCGCGaCCCCGCCGg -3' miRNA: 3'- uGC-CGCCUUc------AUGGCGC-GGGGCGGUg -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 48909 | 0.69 | 0.197366 |
Target: 5'- cACGGCGGggGUcucugccuguggcGCCaGCcuCCCCGCUggACa -3' miRNA: 3'- -UGCCGCCuuCA-------------UGG-CGc-GGGGCGG--UG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 16890 | 0.69 | 0.21313 |
Target: 5'- gGCGGCGGAAG----GCGCCCgucgaggcacugcUGCCGCu -3' miRNA: 3'- -UGCCGCCUUCauggCGCGGG-------------GCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 26781 | 0.76 | 0.065473 |
Target: 5'- uGCGGCGGAucgugGCCgGCGCCgCGUCGCa -3' miRNA: 3'- -UGCCGCCUuca--UGG-CGCGGgGCGGUG- -5' |
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26291 | 5' | -62.6 | NC_005345.2 | + | 11618 | 0.71 | 0.148396 |
Target: 5'- cUGGCGGGAGUgggcggagaGCgaGCGCaCCgCGCCGCa -3' miRNA: 3'- uGCCGCCUUCA---------UGg-CGCG-GG-GCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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