miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 5' -62.6 NC_005345.2 + 21805 1.09 0.000175
Target:  5'- gACGGCGGAAGUACCGCGCCCCGCCACg -3'
miRNA:   3'- -UGCCGCCUUCAUGGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 36501 0.78 0.040656
Target:  5'- aACGGCGGccG-ACCGCGCCCCGgCGa -3'
miRNA:   3'- -UGCCGCCuuCaUGGCGCGGGGCgGUg -5'
26291 5' -62.6 NC_005345.2 + 28374 0.76 0.05695
Target:  5'- gGCGGCGGAuaccAGgGCaCGCGCCgCCGCgGCg -3'
miRNA:   3'- -UGCCGCCU----UCaUG-GCGCGG-GGCGgUG- -5'
26291 5' -62.6 NC_005345.2 + 46464 0.76 0.061925
Target:  5'- -aGGCuGAuc--CCGCGCCCCGCCGCa -3'
miRNA:   3'- ugCCGcCUucauGGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 11665 0.76 0.063675
Target:  5'- cCGGCGGGAacgucGUACCGCucGCCCgCGCUGCa -3'
miRNA:   3'- uGCCGCCUU-----CAUGGCG--CGGG-GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 26781 0.76 0.065473
Target:  5'- uGCGGCGGAucgugGCCgGCGCCgCGUCGCa -3'
miRNA:   3'- -UGCCGCCUuca--UGG-CGCGGgGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 43881 0.76 0.06732
Target:  5'- cGCGGCGGAG----CGCGUCCCGCUGCa -3'
miRNA:   3'- -UGCCGCCUUcaugGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 5662 0.75 0.069217
Target:  5'- cCGGCGGGcccggaccgAGccgACCGCGCUgCGCCGCg -3'
miRNA:   3'- uGCCGCCU---------UCa--UGGCGCGGgGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 40270 0.75 0.07256
Target:  5'- cCGGCGGGcaugAGUccggagagcgucauGCCGCGCCCCcguucaccguGCCGCa -3'
miRNA:   3'- uGCCGCCU----UCA--------------UGGCGCGGGG----------CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 28942 0.74 0.084007
Target:  5'- cGCGGCGGGucuauGGggACaCGCacgacaagGCCCCGCCGCa -3'
miRNA:   3'- -UGCCGCCU-----UCa-UG-GCG--------CGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 31843 0.73 0.096369
Target:  5'- cGCGGCGG--GUGCgGCGCaCCUGCgGCg -3'
miRNA:   3'- -UGCCGCCuuCAUGgCGCG-GGGCGgUG- -5'
26291 5' -62.6 NC_005345.2 + 10677 0.73 0.104593
Target:  5'- cGCGGCgcgGGAAGUGcCCGCGCUgUGCC-Cg -3'
miRNA:   3'- -UGCCG---CCUUCAU-GGCGCGGgGCGGuG- -5'
26291 5' -62.6 NC_005345.2 + 781 0.72 0.11978
Target:  5'- gGCGGCGGggGaUGCCGaccgGgCCCGCUuACa -3'
miRNA:   3'- -UGCCGCCuuC-AUGGCg---CgGGGCGG-UG- -5'
26291 5' -62.6 NC_005345.2 + 41041 0.72 0.132315
Target:  5'- gGCGGCcgggucggucuugcGGAAGUGCUcuuGCaGCCCgGCCGCc -3'
miRNA:   3'- -UGCCG--------------CCUUCAUGG---CG-CGGGgCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 40733 0.71 0.140706
Target:  5'- uCGGCGucca-GCCGCGCCCCGUCGa -3'
miRNA:   3'- uGCCGCcuucaUGGCGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 11618 0.71 0.148396
Target:  5'- cUGGCGGGAGUgggcggagaGCgaGCGCaCCgCGCCGCa -3'
miRNA:   3'- uGCCGCCUUCA---------UGg-CGCG-GG-GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 32247 0.71 0.151979
Target:  5'- aGCGGCaGcAGUGCCucgacggGCGCCuuccgCCGCCACg -3'
miRNA:   3'- -UGCCGcCuUCAUGG-------CGCGG-----GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 5269 0.71 0.152382
Target:  5'- uGCaGCGGGA----CGCGCUCCGCCGCg -3'
miRNA:   3'- -UGcCGCCUUcaugGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 2743 0.71 0.155231
Target:  5'- gACGGCGGucgacAAGUGCCGCcuucggacggcgugGCUgcucgCCGCCGCc -3'
miRNA:   3'- -UGCCGCC-----UUCAUGGCG--------------CGG-----GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 5505 0.7 0.160649
Target:  5'- cCGaGCGGGGucgcuacUACCGCGaCCCCGCCGg -3'
miRNA:   3'- uGC-CGCCUUc------AUGGCGC-GGGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.