miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 5' -62.6 NC_005345.2 + 268 0.66 0.327482
Target:  5'- uCGGCGGggGUcuucucguacACgGUagggcacgcagcaccGCCCCGCCc- -3'
miRNA:   3'- uGCCGCCuuCA----------UGgCG---------------CGGGGCGGug -5'
26291 5' -62.6 NC_005345.2 + 496 0.67 0.274282
Target:  5'- uGCGcCGGAAGUuguGCCGgGUCaggaCGCCGCc -3'
miRNA:   3'- -UGCcGCCUUCA---UGGCgCGGg---GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 781 0.72 0.11978
Target:  5'- gGCGGCGGggGaUGCCGaccgGgCCCGCUuACa -3'
miRNA:   3'- -UGCCGCCuuC-AUGGCg---CgGGGCGG-UG- -5'
26291 5' -62.6 NC_005345.2 + 883 0.67 0.269624
Target:  5'- cGCGGuCGGGcggcaucAGUucguccggaugcuucGCCgGCGCCUCGCCAa -3'
miRNA:   3'- -UGCC-GCCU-------UCA---------------UGG-CGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 1148 0.67 0.279003
Target:  5'- uUGGCGGucGUgacugcucgguccgGCUGCGCCUC-CCACc -3'
miRNA:   3'- uGCCGCCuuCA--------------UGGCGCGGGGcGGUG- -5'
26291 5' -62.6 NC_005345.2 + 1337 0.66 0.32442
Target:  5'- cCGGcCGGGucgcGGUAaCGCG-CCUGCCACg -3'
miRNA:   3'- uGCC-GCCU----UCAUgGCGCgGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 2743 0.71 0.155231
Target:  5'- gACGGCGGucgacAAGUGCCGCcuucggacggcgugGCUgcucgCCGCCGCc -3'
miRNA:   3'- -UGCCGCC-----UUCAUGGCG--------------CGG-----GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 3005 0.69 0.20829
Target:  5'- cCGGUGGAAcccACCGCGUUccgaggCCGCCGCu -3'
miRNA:   3'- uGCCGCCUUca-UGGCGCGG------GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 3253 0.67 0.267648
Target:  5'- cGCGGCGcucggugccGAGGUACCccgugcgcagcuGCGUgCCGuCCACg -3'
miRNA:   3'- -UGCCGC---------CUUCAUGG------------CGCGgGGC-GGUG- -5'
26291 5' -62.6 NC_005345.2 + 3433 0.66 0.316858
Target:  5'- gGCGGCGGgcGgcgAUgCGgGCCCCGagcuCGCg -3'
miRNA:   3'- -UGCCGCCuuCa--UG-GCgCGGGGCg---GUG- -5'
26291 5' -62.6 NC_005345.2 + 3715 0.68 0.236412
Target:  5'- gGCGGC-GAGGUGCaGCugaucguucGCCCgCGCCGCc -3'
miRNA:   3'- -UGCCGcCUUCAUGgCG---------CGGG-GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 3771 0.69 0.219176
Target:  5'- gACGGCcGAGGUGaaCGCGgaCCCgCGCCGCa -3'
miRNA:   3'- -UGCCGcCUUCAUg-GCGC--GGG-GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 4248 0.67 0.280364
Target:  5'- cGCuGCGGAgcGGgacgaggccacguUGCUGCGCCUCGCgACg -3'
miRNA:   3'- -UGcCGCCU--UC-------------AUGGCGCGGGGCGgUG- -5'
26291 5' -62.6 NC_005345.2 + 4463 0.7 0.169317
Target:  5'- cCGGCGGggGcccggcgGCCGUGUCCgGCUcgACg -3'
miRNA:   3'- uGCCGCCuuCa------UGGCGCGGGgCGG--UG- -5'
26291 5' -62.6 NC_005345.2 + 5269 0.71 0.152382
Target:  5'- uGCaGCGGGA----CGCGCUCCGCCGCg -3'
miRNA:   3'- -UGcCGCCUUcaugGCGCGGGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 5408 0.67 0.281047
Target:  5'- cCGGCGGucg-GCCgaGCGUCUCGCCGa -3'
miRNA:   3'- uGCCGCCuucaUGG--CGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 5505 0.7 0.160649
Target:  5'- cCGaGCGGGGucgcuacUACCGCGaCCCCGCCGg -3'
miRNA:   3'- uGC-CGCCUUc------AUGGCGC-GGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 5662 0.75 0.069217
Target:  5'- cCGGCGGGcccggaccgAGccgACCGCGCUgCGCCGCg -3'
miRNA:   3'- uGCCGCCU---------UCa--UGGCGCGGgGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 7531 0.67 0.279003
Target:  5'- gGCGGCGGucguGGUGCUGauCCCgaccagguauccgaCGCCGCc -3'
miRNA:   3'- -UGCCGCCu---UCAUGGCgcGGG--------------GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 7775 0.66 0.32442
Target:  5'- uCGGCGuccauGAGUccguugccgagcGCUGCGCCgCCGCCGg -3'
miRNA:   3'- uGCCGCc----UUCA------------UGGCGCGG-GGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.