Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2630 | 3' | -61.8 | NC_001491.2 | + | 4863 | 0.69 | 0.440932 |
Target: 5'- aGCUCUucGGGGUGgcggccccAGCGGCCGGGCg-- -3' miRNA: 3'- -UGGGGu-UCUCGC--------UCGCCGGCCCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 104729 | 0.69 | 0.414821 |
Target: 5'- cGCCCCAAuGGGCGAGUcauccGGCagagGGGUUUUu -3' miRNA: 3'- -UGGGGUU-CUCGCUCG-----CCGg---CCCGAAA- -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 84465 | 0.7 | 0.357752 |
Target: 5'- cGCgCCCA--GGCGAGCGcagaGCCGGGCg-- -3' miRNA: 3'- -UG-GGGUucUCGCUCGC----CGGCCCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 33195 | 0.7 | 0.389681 |
Target: 5'- uGCCCCAcaucGGGGaCGccauGGCGGCCGGGa--- -3' miRNA: 3'- -UGGGGU----UCUC-GC----UCGCCGGCCCgaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 34397 | 0.71 | 0.350061 |
Target: 5'- aGCCCCuGGAGCcGGCGGCCcaGGCc-- -3' miRNA: 3'- -UGGGGuUCUCGcUCGCCGGc-CCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 2961 | 0.71 | 0.319773 |
Target: 5'- gGCCgCCugagGGGAGCGGgccuucuGCGGCUGGGCUg- -3' miRNA: 3'- -UGG-GG----UUCUCGCU-------CGCCGGCCCGAaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 3002 | 0.72 | 0.267063 |
Target: 5'- cCCCCGGGAGCGGGCguuugucuggguGGCCcGGCa-- -3' miRNA: 3'- uGGGGUUCUCGCUCG------------CCGGcCCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 3712 | 0.73 | 0.237475 |
Target: 5'- uCCCC-GGAGCGGccGCGGCCGcGGCa-- -3' miRNA: 3'- uGGGGuUCUCGCU--CGCCGGC-CCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 24737 | 0.74 | 0.221072 |
Target: 5'- cGCCCCGGGGacccGCGGGCGcccgccgcccGCCGGGCg-- -3' miRNA: 3'- -UGGGGUUCU----CGCUCGC----------CGGCCCGaaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 34363 | 0.75 | 0.186532 |
Target: 5'- cGCCCCAGGGGCaaGAGCGGCaagCGGcGCUc- -3' miRNA: 3'- -UGGGGUUCUCG--CUCGCCG---GCC-CGAaa -5' |
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2630 | 3' | -61.8 | NC_001491.2 | + | 144456 | 0.94 | 0.008478 |
Target: 5'- aACCCCAAGAGCGAGCGGCCGGcGUUUg -3' miRNA: 3'- -UGGGGUUCUCGCUCGCCGGCC-CGAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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