miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2630 3' -61.8 NC_001491.2 + 56086 0.67 0.563378
Target:  5'- uGCCCgggggaAAGAGUGcaccgcGGUGGCCGGGUg-- -3'
miRNA:   3'- -UGGGg-----UUCUCGC------UCGCCGGCCCGaaa -5'
2630 3' -61.8 NC_001491.2 + 67806 0.66 0.623142
Target:  5'- gACUCCcAGGGCG-GCGGCUaucauuuuguuGGGCa-- -3'
miRNA:   3'- -UGGGGuUCUCGCuCGCCGG-----------CCCGaaa -5'
2630 3' -61.8 NC_001491.2 + 76878 0.66 0.633166
Target:  5'- cACCCCAucGAGUGAGUaGGUCaGGCc-- -3'
miRNA:   3'- -UGGGGUu-CUCGCUCG-CCGGcCCGaaa -5'
2630 3' -61.8 NC_001491.2 + 84465 0.7 0.357752
Target:  5'- cGCgCCCA--GGCGAGCGcagaGCCGGGCg-- -3'
miRNA:   3'- -UG-GGGUucUCGCUCGC----CGGCCCGaaa -5'
2630 3' -61.8 NC_001491.2 + 84585 0.66 0.633166
Target:  5'- aGCCCCAAGccGCac-CGGCgGGGCUa- -3'
miRNA:   3'- -UGGGGUUCu-CGcucGCCGgCCCGAaa -5'
2630 3' -61.8 NC_001491.2 + 94629 0.68 0.494855
Target:  5'- uACCCCAGGGGCGAcacCGGUaggcucacugucuUGGGCg-- -3'
miRNA:   3'- -UGGGGUUCUCGCUc--GCCG-------------GCCCGaaa -5'
2630 3' -61.8 NC_001491.2 + 104729 0.69 0.414821
Target:  5'- cGCCCCAAuGGGCGAGUcauccGGCagagGGGUUUUu -3'
miRNA:   3'- -UGGGGUU-CUCGCUCG-----CCGg---CCCGAAA- -5'
2630 3' -61.8 NC_001491.2 + 117552 0.66 0.57326
Target:  5'- gACCCCAc-AGCaGAGCGGCCcGGaCUUc -3'
miRNA:   3'- -UGGGGUucUCG-CUCGCCGGcCC-GAAa -5'
2630 3' -61.8 NC_001491.2 + 144064 0.67 0.563378
Target:  5'- gUCCUAAGAGCaAGUGGgCGcGGCUUc -3'
miRNA:   3'- uGGGGUUCUCGcUCGCCgGC-CCGAAa -5'
2630 3' -61.8 NC_001491.2 + 144456 0.94 0.008478
Target:  5'- aACCCCAAGAGCGAGCGGCCGGcGUUUg -3'
miRNA:   3'- -UGGGGUUCUCGCUCGCCGGCC-CGAAa -5'
2630 3' -61.8 NC_001491.2 + 148702 0.66 0.623142
Target:  5'- cCCCCAuuGGGCG-GCGG-UGGGCa-- -3'
miRNA:   3'- uGGGGUu-CUCGCuCGCCgGCCCGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.