miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26302 3' -55.6 NC_005345.2 + 45859 0.66 0.696768
Target:  5'- ---cGAUCGUGGggGCggGGAGCCCgaCGCc -3'
miRNA:   3'- uagcCUAGCACC--UGa-CCUUGGGa-GCG- -5'
26302 3' -55.6 NC_005345.2 + 33966 0.66 0.696768
Target:  5'- cUCGGAUCGaGGG-UGGGGCCaugaGCa -3'
miRNA:   3'- uAGCCUAGCaCCUgACCUUGGgag-CG- -5'
26302 3' -55.6 NC_005345.2 + 31479 0.66 0.674919
Target:  5'- -aCGGAUCGagcGGAUcGGcGGCCC-CGCg -3'
miRNA:   3'- uaGCCUAGCa--CCUGaCC-UUGGGaGCG- -5'
26302 3' -55.6 NC_005345.2 + 2207 0.66 0.663928
Target:  5'- -gCGcGAUCGcGGACUGGcuCaCCUUGUa -3'
miRNA:   3'- uaGC-CUAGCaCCUGACCuuG-GGAGCG- -5'
26302 3' -55.6 NC_005345.2 + 15925 0.66 0.640761
Target:  5'- uUCGGGgggccggcucugcUCGUGuGACUuGAGuCCCUCGUu -3'
miRNA:   3'- uAGCCU-------------AGCAC-CUGAcCUU-GGGAGCG- -5'
26302 3' -55.6 NC_005345.2 + 37172 0.67 0.630817
Target:  5'- gAUCGcGAgccgacccgacuugaCGUGGugcgGCUGGAuccacagccguucGCCCUCGCg -3'
miRNA:   3'- -UAGC-CUa--------------GCACC----UGACCU-------------UGGGAGCG- -5'
26302 3' -55.6 NC_005345.2 + 12500 0.67 0.597714
Target:  5'- -gCGGAUCGaGGuuUGGuGCCCUUGg -3'
miRNA:   3'- uaGCCUAGCaCCugACCuUGGGAGCg -5'
26302 3' -55.6 NC_005345.2 + 38718 0.67 0.583437
Target:  5'- --gGGGUCGccggcUGGACggugguauccggggUGGcGACCCUCGCc -3'
miRNA:   3'- uagCCUAGC-----ACCUG--------------ACC-UUGGGAGCG- -5'
26302 3' -55.6 NC_005345.2 + 26785 0.68 0.564875
Target:  5'- -gCGGAUCGUGG-CcGGcGCCgCgUCGCa -3'
miRNA:   3'- uaGCCUAGCACCuGaCCuUGG-G-AGCG- -5'
26302 3' -55.6 NC_005345.2 + 4584 0.68 0.543242
Target:  5'- aGUCcGGUCGUGGAgUGcgacucGGACCCgcUCGCg -3'
miRNA:   3'- -UAGcCUAGCACCUgAC------CUUGGG--AGCG- -5'
26302 3' -55.6 NC_005345.2 + 18061 0.82 0.079052
Target:  5'- -gCGGGUgGUGGacaGCUGGAAuCCCUCGCg -3'
miRNA:   3'- uaGCCUAgCACC---UGACCUU-GGGAGCG- -5'
26302 3' -55.6 NC_005345.2 + 12086 1.1 0.000653
Target:  5'- gAUCGGAUCGUGGACUGGAACCCUCGCa -3'
miRNA:   3'- -UAGCCUAGCACCUGACCUUGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.