miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2631 3' -47.9 NC_001491.2 + 126940 0.66 0.999225
Target:  5'- gGGGGCGCUa---UACCuuCGCAAGCGc -3'
miRNA:   3'- -UUUCGCGGaaacAUGGuuGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 136308 0.66 0.998823
Target:  5'- -uGGCgGCCUUgggcgGUGgCAGCGcCAGACGc -3'
miRNA:   3'- uuUCG-CGGAAa----CAUgGUUGC-GUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 10281 0.66 0.998823
Target:  5'- -cGGCGCCggUGgagACCcACGcCGAGCu -3'
miRNA:   3'- uuUCGCGGaaACa--UGGuUGC-GUUUGu -5'
2631 3' -47.9 NC_001491.2 + 99821 0.66 0.998823
Target:  5'- ----gGCCUcUGUGCCGGCgGCAuGCAu -3'
miRNA:   3'- uuucgCGGAaACAUGGUUG-CGUuUGU- -5'
2631 3' -47.9 NC_001491.2 + 106882 0.67 0.997892
Target:  5'- -cGGCGCUUggGgcggagccaGCCAACGUGAACGu -3'
miRNA:   3'- uuUCGCGGAaaCa--------UGGUUGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 117040 0.67 0.997892
Target:  5'- uGGGGCGCgUUUGUugCAauugcucucgcGCGCcccAAGCAg -3'
miRNA:   3'- -UUUCGCGgAAACAugGU-----------UGCG---UUUGU- -5'
2631 3' -47.9 NC_001491.2 + 1575 0.67 0.996978
Target:  5'- -cAGCGCCgc---GCCGGcCGCAGGCGa -3'
miRNA:   3'- uuUCGCGGaaacaUGGUU-GCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 147851 0.67 0.996978
Target:  5'- ----gGCCgcUGUACCGAUGCAuACGc -3'
miRNA:   3'- uuucgCGGaaACAUGGUUGCGUuUGU- -5'
2631 3' -47.9 NC_001491.2 + 83371 0.67 0.99641
Target:  5'- aGGAGCGgCUgcUGUACCu-CGUGAGCAa -3'
miRNA:   3'- -UUUCGCgGAa-ACAUGGuuGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 112287 0.68 0.995758
Target:  5'- --cGaCGCCUgUGUGguuuCCAugGCAAGCGc -3'
miRNA:   3'- uuuC-GCGGAaACAU----GGUugCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 12187 0.68 0.994162
Target:  5'- cGAGCGCgcagcggaagacCUcgGUGCCGGCGguGGCGg -3'
miRNA:   3'- uUUCGCG------------GAaaCAUGGUUGCguUUGU- -5'
2631 3' -47.9 NC_001491.2 + 51195 0.68 0.9932
Target:  5'- aAAAGCGCCg--GcUACCAGCuguucGCAGGCc -3'
miRNA:   3'- -UUUCGCGGaaaC-AUGGUUG-----CGUUUGu -5'
2631 3' -47.9 NC_001491.2 + 35149 0.68 0.992115
Target:  5'- --uGCGCCUggGcuccGCCAgGCGCAAGCu -3'
miRNA:   3'- uuuCGCGGAaaCa---UGGU-UGCGUUUGu -5'
2631 3' -47.9 NC_001491.2 + 78673 0.69 0.989535
Target:  5'- -uAGCGcCCUUUGguauccaaaaUACCGACGCGcccAGCGg -3'
miRNA:   3'- uuUCGC-GGAAAC----------AUGGUUGCGU---UUGU- -5'
2631 3' -47.9 NC_001491.2 + 124704 0.7 0.977763
Target:  5'- --cGUGUUUUUG-GCCAACGUAGACGg -3'
miRNA:   3'- uuuCGCGGAAACaUGGUUGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 52780 0.7 0.977763
Target:  5'- uAAGCGCCgccgUUaUGCCAcCGUAGACGg -3'
miRNA:   3'- uUUCGCGGa---AAcAUGGUuGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 2081 0.7 0.972223
Target:  5'- --uGCGCCUggcgGaGCCcaGGCGCAGGCAg -3'
miRNA:   3'- uuuCGCGGAaa--CaUGG--UUGCGUUUGU- -5'
2631 3' -47.9 NC_001491.2 + 77361 0.71 0.96575
Target:  5'- cGAGGCGUCUUUGUggGCgGGCGCGccuGGCu -3'
miRNA:   3'- -UUUCGCGGAAACA--UGgUUGCGU---UUGu -5'
2631 3' -47.9 NC_001491.2 + 40366 0.71 0.96575
Target:  5'- uAAGGCGCCcccuaaUGU-CCAGCGCGuGCAu -3'
miRNA:   3'- -UUUCGCGGaa----ACAuGGUUGCGUuUGU- -5'
2631 3' -47.9 NC_001491.2 + 32812 0.71 0.958284
Target:  5'- cGGGCGUCU----ACCAGCGCGAGCc -3'
miRNA:   3'- uUUCGCGGAaacaUGGUUGCGUUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.