miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26322 5' -58 NC_005345.2 + 18754 0.66 0.565948
Target:  5'- gGACgCGUCguCGAGGuacgccUCGACCUGCGcCc -3'
miRNA:   3'- -CUGgGUAG--GCUCC------AGCUGGACGCaGa -5'
26322 5' -58 NC_005345.2 + 19985 0.66 0.544649
Target:  5'- cGACCCGguucgCCGAGGgCGACagGCGggCUg -3'
miRNA:   3'- -CUGGGUa----GGCUCCaGCUGgaCGCa-GA- -5'
26322 5' -58 NC_005345.2 + 40765 0.66 0.544648
Target:  5'- cGGCUCGUCgGGccGGUCGGCCgGCG-Cg -3'
miRNA:   3'- -CUGGGUAGgCU--CCAGCUGGaCGCaGa -5'
26322 5' -58 NC_005345.2 + 32223 0.66 0.534096
Target:  5'- gGGCUCGUCCGcGGUgaccgCGACCgGgGUCa -3'
miRNA:   3'- -CUGGGUAGGCuCCA-----GCUGGaCgCAGa -5'
26322 5' -58 NC_005345.2 + 26639 0.66 0.534095
Target:  5'- cGCCCggCCG-GG-CGACCcGUGUCg -3'
miRNA:   3'- cUGGGuaGGCuCCaGCUGGaCGCAGa -5'
26322 5' -58 NC_005345.2 + 30452 0.66 0.531993
Target:  5'- cACCCccgAUCCGGGcacgcugcgcgCGAUCUGCGUCg -3'
miRNA:   3'- cUGGG---UAGGCUCca---------GCUGGACGCAGa -5'
26322 5' -58 NC_005345.2 + 28784 0.67 0.492678
Target:  5'- cGACCCGUCCGGGG-CGA--UGC-UCa -3'
miRNA:   3'- -CUGGGUAGGCUCCaGCUggACGcAGa -5'
26322 5' -58 NC_005345.2 + 26499 0.67 0.472526
Target:  5'- --aCCGUCCGcAGGUCGACCccuUGCa--- -3'
miRNA:   3'- cugGGUAGGC-UCCAGCUGG---ACGcaga -5'
26322 5' -58 NC_005345.2 + 14805 0.68 0.405543
Target:  5'- aGugCgGcgCCGAGGucuUCGGCCUGCGUg- -3'
miRNA:   3'- -CugGgUa-GGCUCC---AGCUGGACGCAga -5'
26322 5' -58 NC_005345.2 + 20588 0.69 0.37872
Target:  5'- gGGCCCAaaUCCGGGGcCGGCggGCGcUCg -3'
miRNA:   3'- -CUGGGU--AGGCUCCaGCUGgaCGC-AGa -5'
26322 5' -58 NC_005345.2 + 5399 0.7 0.313222
Target:  5'- cACUCAggcCCGGcGGUCGGCCgaGCGUCUc -3'
miRNA:   3'- cUGGGUa--GGCU-CCAGCUGGa-CGCAGA- -5'
26322 5' -58 NC_005345.2 + 22637 0.7 0.313222
Target:  5'- cGCUCGUgCCGggugcaagGGGUCGACCUGCGg-- -3'
miRNA:   3'- cUGGGUA-GGC--------UCCAGCUGGACGCaga -5'
26322 5' -58 NC_005345.2 + 18483 0.7 0.308671
Target:  5'- cGACCCAUgcccggguacccgggUCGAGGUCGAgCgaguacgcgGCGUCg -3'
miRNA:   3'- -CUGGGUA---------------GGCUCCAGCUgGa--------CGCAGa -5'
26322 5' -58 NC_005345.2 + 41844 0.7 0.305665
Target:  5'- cGACUCAU-CGGGGaCGACCUcgGCGUCg -3'
miRNA:   3'- -CUGGGUAgGCUCCaGCUGGA--CGCAGa -5'
26322 5' -58 NC_005345.2 + 5527 0.71 0.276839
Target:  5'- cGACCCcgCCGGGGggccCGACCUgaucaGCGUg- -3'
miRNA:   3'- -CUGGGuaGGCUCCa---GCUGGA-----CGCAga -5'
26322 5' -58 NC_005345.2 + 32668 0.72 0.256674
Target:  5'- cGACgCCGUcgaggCCGAGGUCGACCUGacccCGUUc -3'
miRNA:   3'- -CUG-GGUA-----GGCUCCAGCUGGAC----GCAGa -5'
26322 5' -58 NC_005345.2 + 22131 0.73 0.219966
Target:  5'- cGACCCGaUCGAGGaacUCGACC-GCGUCc -3'
miRNA:   3'- -CUGGGUaGGCUCC---AGCUGGaCGCAGa -5'
26322 5' -58 NC_005345.2 + 18346 0.73 0.198057
Target:  5'- cGGCCCGggUCGAGGUCGACCaGUcgGUCa -3'
miRNA:   3'- -CUGGGUa-GGCUCCAGCUGGaCG--CAGa -5'
26322 5' -58 NC_005345.2 + 4308 1.07 0.000693
Target:  5'- cGACCCAUCCGAGGUCGACCUGCGUCUc -3'
miRNA:   3'- -CUGGGUAGGCUCCAGCUGGACGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.