miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 1159 0.66 0.538095
Target:  5'- cGCGCCGCgAG-GGGAGCGuGCgCggCGCa -3'
miRNA:   3'- cCGCGGCG-UCaCUUUCGUcCG-Ga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 33359 0.66 0.538095
Target:  5'- cGGCGCgagaGgGGUGggGGC-GGUggCGCg -3'
miRNA:   3'- -CCGCGg---CgUCACuuUCGuCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 28093 0.66 0.534914
Target:  5'- gGGUGCCGUccGUGAGGcGCAGGUgcaugggggguccuCUCGg -3'
miRNA:   3'- -CCGCGGCGu-CACUUU-CGUCCG--------------GAGCg -5'
26326 3' -57.8 NC_005345.2 + 5158 0.66 0.534914
Target:  5'- cGCGCCGCGGcGGccgacgagucgggcGAGCcgccGGGCUgcaCGCa -3'
miRNA:   3'- cCGCGGCGUCaCU--------------UUCG----UCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 40265 0.66 0.52752
Target:  5'- gGGCGCCgGCGGgcaugaguccgGAGAGCGucauGCCgCGCc -3'
miRNA:   3'- -CCGCGG-CGUCa----------CUUUCGUc---CGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 27920 0.66 0.506612
Target:  5'- cGGUGUCGCuuccGAgcGCGGuGCCUCGa -3'
miRNA:   3'- -CCGCGGCGuca-CUuuCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 45558 0.66 0.517024
Target:  5'- aGCgGCCGaGGUcGGGGCGGGCCggUUGCg -3'
miRNA:   3'- cCG-CGGCgUCAcUUUCGUCCGG--AGCG- -5'
26326 3' -57.8 NC_005345.2 + 30483 0.66 0.538095
Target:  5'- uGCGUCGCGGUGGugcGCcGGGUCaUgGCg -3'
miRNA:   3'- cCGCGGCGUCACUuu-CG-UCCGG-AgCG- -5'
26326 3' -57.8 NC_005345.2 + 15080 0.66 0.517024
Target:  5'- aGCGCCuGC-GUGAu--CAGGCCUacCGCc -3'
miRNA:   3'- cCGCGG-CGuCACUuucGUCCGGA--GCG- -5'
26326 3' -57.8 NC_005345.2 + 46388 0.67 0.480991
Target:  5'- aGGcCGCCGCGcGUGGcgcgcuccacauGCGGGCCgcugucaUCGCc -3'
miRNA:   3'- -CC-GCGGCGU-CACUuu----------CGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 14960 0.67 0.496291
Target:  5'- cGCGCCGCGGcUGAucagucGGUcgGGGCCcCGg -3'
miRNA:   3'- cCGCGGCGUC-ACUu-----UCG--UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 26881 0.67 0.456016
Target:  5'- cGGUGCgGUcgaugGGUGAGGcgcuGCAGGCggcgCUCGCc -3'
miRNA:   3'- -CCGCGgCG-----UCACUUU----CGUCCG----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 2630 0.67 0.456016
Target:  5'- cGGgGCCgaacGCGGUaccGAGGUAGGuacCCUCGCg -3'
miRNA:   3'- -CCgCGG----CGUCAc--UUUCGUCC---GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 33391 0.67 0.475942
Target:  5'- uGGCuacaGCCGCGGUcGAGGUcGGCgUCGg -3'
miRNA:   3'- -CCG----CGGCGUCAcUUUCGuCCGgAGCg -5'
26326 3' -57.8 NC_005345.2 + 37241 0.67 0.475942
Target:  5'- cGUGCCGUAGU---AGCGGGCgaCGg -3'
miRNA:   3'- cCGCGGCGUCAcuuUCGUCCGgaGCg -5'
26326 3' -57.8 NC_005345.2 + 6544 0.67 0.456016
Target:  5'- gGGCGggGCGGUGggGGaCGuGGCUaCGCg -3'
miRNA:   3'- -CCGCggCGUCACuuUC-GU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 48349 0.67 0.465924
Target:  5'- gGGCGa-GCAgGUGuAAGCGGGCC-CGg -3'
miRNA:   3'- -CCGCggCGU-CACuUUCGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 431 0.67 0.456016
Target:  5'- gGGCGgaCGUAGUacGGGCGGGuCCguggCGCa -3'
miRNA:   3'- -CCGCg-GCGUCAcuUUCGUCC-GGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 46556 0.67 0.450126
Target:  5'- uGGCuuGCCGUGGUcuuugcGGAGCAGgugggucauguacacGCCUCGCg -3'
miRNA:   3'- -CCG--CGGCGUCAc-----UUUCGUC---------------CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31311 0.67 0.496291
Target:  5'- gGGCGCugcugCGCGGUcugGAGGGC-GGCCggaCGUg -3'
miRNA:   3'- -CCGCG-----GCGUCA---CUUUCGuCCGGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.