miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 16136 0.66 0.563754
Target:  5'- cGGCGUCccgGCGGUacaGAucGCuaagacgcacgccguAGGUCUCGCg -3'
miRNA:   3'- -CCGCGG---CGUCA---CUuuCG---------------UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27920 0.66 0.506612
Target:  5'- cGGUGUCGCuuccGAgcGCGGuGCCUCGa -3'
miRNA:   3'- -CCGCGGCGuca-CUuuCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 43698 0.66 0.506612
Target:  5'- -uCGCCGC-GUG--GGCcGGCCUCGa -3'
miRNA:   3'- ccGCGGCGuCACuuUCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 45153 0.66 0.559452
Target:  5'- cGCGCUGCGGcucguccGAcCGGGCCUCGa -3'
miRNA:   3'- cCGCGGCGUCacu----UUcGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 14820 0.66 0.517024
Target:  5'- gGGCGCgGguGUGGucgacgcccGAGCAGcuuGCCggGCu -3'
miRNA:   3'- -CCGCGgCguCACU---------UUCGUC---CGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 7123 0.66 0.517024
Target:  5'- uGGCGCCGCGc-GAAccgGGCGGGgCaCGUg -3'
miRNA:   3'- -CCGCGGCGUcaCUU---UCGUCCgGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 47906 0.66 0.517024
Target:  5'- cGUGCCGCAGcccgccgGAAAGCcauGGGaCC-CGUa -3'
miRNA:   3'- cCGCGGCGUCa------CUUUCG---UCC-GGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 18452 0.66 0.52752
Target:  5'- uGCGCCcGUGGUGGAc-CGGGUCcCGCg -3'
miRNA:   3'- cCGCGG-CGUCACUUucGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 18528 0.66 0.52752
Target:  5'- cGGCGCCaugugcacCGGUGGGcuGCucgGGGCgCUCGCc -3'
miRNA:   3'- -CCGCGGc-------GUCACUUu-CG---UCCG-GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 15080 0.66 0.517024
Target:  5'- aGCGCCuGC-GUGAu--CAGGCCUacCGCc -3'
miRNA:   3'- cCGCGG-CGuCACUuucGUCCGGA--GCG- -5'
26326 3' -57.8 NC_005345.2 + 45558 0.66 0.517024
Target:  5'- aGCgGCCGaGGUcGGGGCGGGCCggUUGCg -3'
miRNA:   3'- cCG-CGGCgUCAcUUUCGUCCGG--AGCG- -5'
26326 3' -57.8 NC_005345.2 + 40265 0.66 0.52752
Target:  5'- gGGCGCCgGCGGgcaugaguccgGAGAGCGucauGCCgCGCc -3'
miRNA:   3'- -CCGCGG-CGUCa----------CUUUCGUc---CGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 17489 0.66 0.559452
Target:  5'- cGGCGUCGggaAG-GAAcuGCGGGCCgccggUCGCc -3'
miRNA:   3'- -CCGCGGCg--UCaCUUu-CGUCCGG-----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 43722 0.66 0.548741
Target:  5'- gGGCGCCGCcgaagaacucGGcGAGAcGCucGGCCgacCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCaCUUU-CGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 38448 0.66 0.548741
Target:  5'- aGCuGCCGCAG-GAcAGGcCGGGCacagCGCg -3'
miRNA:   3'- cCG-CGGCGUCaCU-UUC-GUCCGga--GCG- -5'
26326 3' -57.8 NC_005345.2 + 11846 0.66 0.548741
Target:  5'- -cCGCUGCuGUGAGAGCAG-CC-CGg -3'
miRNA:   3'- ccGCGGCGuCACUUUCGUCcGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 1159 0.66 0.538095
Target:  5'- cGCGCCGCgAG-GGGAGCGuGCgCggCGCa -3'
miRNA:   3'- cCGCGGCG-UCaCUUUCGUcCG-Ga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 33359 0.66 0.538095
Target:  5'- cGGCGCgagaGgGGUGggGGC-GGUggCGCg -3'
miRNA:   3'- -CCGCGg---CgUCACuuUCGuCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 28093 0.66 0.534914
Target:  5'- gGGUGCCGUccGUGAGGcGCAGGUgcaugggggguccuCUCGg -3'
miRNA:   3'- -CCGCGGCGu-CACUUU-CGUCCG--------------GAGCg -5'
26326 3' -57.8 NC_005345.2 + 5158 0.66 0.534914
Target:  5'- cGCGCCGCGGcGGccgacgagucgggcGAGCcgccGGGCUgcaCGCa -3'
miRNA:   3'- cCGCGGCGUCaCU--------------UUCG----UCCGGa--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.