miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 25738 0.86 0.024938
Target:  5'- gGGCGUCGCGGUGguGGCAGGCgaaccggcucgaCUCGCg -3'
miRNA:   3'- -CCGCGGCGUCACuuUCGUCCG------------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 48562 0.7 0.314966
Target:  5'- gGGCGUCGCGGau---GCGGGCgccgaugagCUCGCg -3'
miRNA:   3'- -CCGCGGCGUCacuuuCGUCCG---------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37576 0.7 0.322745
Target:  5'- gGGCGCagGCGGgcUGcAGGCGGGCgaccggCUCGCg -3'
miRNA:   3'- -CCGCGg-CGUC--ACuUUCGUCCG------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 45153 0.66 0.559452
Target:  5'- cGCGCUGCGGcucguccGAcCGGGCCUCGa -3'
miRNA:   3'- cCGCGGCGUCacu----UUcGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 14898 0.74 0.188341
Target:  5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3'
miRNA:   3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 23661 0.73 0.193439
Target:  5'- cGGCGCCGacCAG-GGucgcggccggucGGGCGGGCCgagCGCa -3'
miRNA:   3'- -CCGCGGC--GUCaCU------------UUCGUCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 19116 0.72 0.2387
Target:  5'- gGGCGCucacCGCauGGUGGcuGCGGGCCgcauggCGCg -3'
miRNA:   3'- -CCGCG----GCG--UCACUuuCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 11691 0.72 0.244312
Target:  5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3'
miRNA:   3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 28970 0.71 0.257834
Target:  5'- aGGCGCUGCgcgaccugcaGGUGAAccGCuuccGCCUCGCg -3'
miRNA:   3'- -CCGCGGCG----------UCACUUu-CGuc--CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 36186 0.7 0.314966
Target:  5'- uGGuCGCCGguGguccuGCAGGCCcUGCa -3'
miRNA:   3'- -CC-GCGGCguCacuuuCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 24759 0.71 0.285273
Target:  5'- uGGCuGUCGCAGcccGAAGuGCGGGCgUCGUc -3'
miRNA:   3'- -CCG-CGGCGUCa--CUUU-CGUCCGgAGCG- -5'
26326 3' -57.8 NC_005345.2 + 9594 0.71 0.257834
Target:  5'- gGGCGUgCGaGGUGcAGAGCgAGuGCCUCGCg -3'
miRNA:   3'- -CCGCG-GCgUCAC-UUUCG-UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 14196 0.79 0.081944
Target:  5'- aGGaCGCCGCcgaGGUGuccgccGAGCAGGCCcUCGCc -3'
miRNA:   3'- -CC-GCGGCG---UCACu-----UUCGUCCGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 26797 0.71 0.292483
Target:  5'- cGGCGCCGC-GUc---GCAGGCgcugCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuuuCGUCCG----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 23355 0.78 0.08924
Target:  5'- cGUGCUGCGcUGGGAGCGGGCCgaggCGCc -3'
miRNA:   3'- cCGCGGCGUcACUUUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 25368 0.71 0.257176
Target:  5'- uGGCGUgGCAGUgccggcucgacgcGAucGCcgccGGCCUCGCc -3'
miRNA:   3'- -CCGCGgCGUCA-------------CUuuCGu---CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 30708 0.7 0.299835
Target:  5'- gGGUgGCCGCGGUGAucGGCgAGGaCCUgcugcCGCa -3'
miRNA:   3'- -CCG-CGGCGUCACUu-UCG-UCC-GGA-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 10296 0.7 0.320396
Target:  5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3'
miRNA:   3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 20428 0.72 0.232591
Target:  5'- gGGCGCCGUAccugcccccGUGGAAG-AGGUC-CGCg -3'
miRNA:   3'- -CCGCGGCGU---------CACUUUCgUCCGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.