miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 431 0.67 0.456016
Target:  5'- gGGCGgaCGUAGUacGGGCGGGuCCguggCGCa -3'
miRNA:   3'- -CCGCg-GCGUCAcuUUCGUCC-GGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 1159 0.66 0.538095
Target:  5'- cGCGCCGCgAG-GGGAGCGuGCgCggCGCa -3'
miRNA:   3'- cCGCGGCG-UCaCUUUCGUcCG-Ga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 1675 0.68 0.426996
Target:  5'- cGGCGUCGUAcGgccgGAaguuGAGCGGGUCgagaggCGCg -3'
miRNA:   3'- -CCGCGGCGU-Ca---CU----UUCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 2125 1.13 0.000251
Target:  5'- cGGCGCCGCAGUGAAAGCAGGCCUCGCc -3'
miRNA:   3'- -CCGCGGCGUCACUUUCGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 2217 0.68 0.426996
Target:  5'- uGUGCCGUGGUGAuguGGaCAGGgagaUCUUGCg -3'
miRNA:   3'- cCGCGGCGUCACUu--UC-GUCC----GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 2630 0.67 0.456016
Target:  5'- cGGgGCCgaacGCGGUaccGAGGUAGGuacCCUCGCg -3'
miRNA:   3'- -CCgCGG----CGUCAc--UUUCGUCC---GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 2750 0.69 0.346109
Target:  5'- cGGC-CCGCAuGUGGAgcgcgccacgcgcGGC-GGCCUCGg -3'
miRNA:   3'- -CCGcGGCGU-CACUU-------------UCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 3051 0.7 0.33873
Target:  5'- gGGuCGCCGC-GUGGAuguccgcGCAGGCCcCGg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu------CGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 3427 0.7 0.299835
Target:  5'- gGGCGCgGCGGcGGGcggcgauGCGGGCCccgagcUCGCg -3'
miRNA:   3'- -CCGCGgCGUCaCUUu------CGUCCGG------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 3608 0.66 0.556233
Target:  5'- cGGcCGCugucgcccugcucgCGCAGUGcAAGCGGGCgaagagugUCGCg -3'
miRNA:   3'- -CC-GCG--------------GCGUCACuUUCGUCCGg-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 4178 0.68 0.399099
Target:  5'- aGGCGCuCaCGG-GgcGGCAGGCCgUGCa -3'
miRNA:   3'- -CCGCG-GcGUCaCuuUCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 4389 0.68 0.426996
Target:  5'- cGGCGCCGCA-UGAgcGCgaucgacaAGGCC-CGg -3'
miRNA:   3'- -CCGCGGCGUcACUuuCG--------UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 5158 0.66 0.534914
Target:  5'- cGCGCCGCGGcGGccgacgagucgggcGAGCcgccGGGCUgcaCGCa -3'
miRNA:   3'- cCGCGGCGUCaCU--------------UUCG----UCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 5253 0.67 0.465924
Target:  5'- cGCGCCGCcGUGGcgaugcAGCGGGacgCGCu -3'
miRNA:   3'- cCGCGGCGuCACUu-----UCGUCCggaGCG- -5'
26326 3' -57.8 NC_005345.2 + 5335 0.68 0.426996
Target:  5'- aGCGCUGCAGU----GCGGuGCCgugggCGCg -3'
miRNA:   3'- cCGCGGCGUCAcuuuCGUC-CGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 5891 0.69 0.346936
Target:  5'- uGGCGUCGUccuccuggucGGUGAugaauGCGGGCCacgacagcgggUCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCACUuu---CGUCCGG-----------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 6379 0.68 0.43367
Target:  5'- uGGCGuuGCGGUcccaugugaugugcGGAAucgcuuucGCGGGCC-CGCc -3'
miRNA:   3'- -CCGCggCGUCA--------------CUUU--------CGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 6544 0.67 0.456016
Target:  5'- gGGCGggGCGGUGggGGaCGuGGCUaCGCg -3'
miRNA:   3'- -CCGCggCGUCACuuUC-GU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 7123 0.66 0.517024
Target:  5'- uGGCGCCGCGc-GAAccgGGCGGGgCaCGUg -3'
miRNA:   3'- -CCGCGGCGUcaCUU---UCGUCCgGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 8006 0.67 0.486066
Target:  5'- cGGCgGCCGCGGUuucacGAGCucgacGGGCucgacCUCGCg -3'
miRNA:   3'- -CCG-CGGCGUCAcu---UUCG-----UCCG-----GAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.